LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g3192	ATGTCGAAGAATTCAGTACAGAGTTTATTTCATAACTTTGAGAAAGTTGCAGATTTTGTTCAACATCACGTATCTAATTTCATAGGCCATCATATCCAGTCATCAGGAACCTCTGGTATAGGCTCTATCAATGCCTCCATCAAAGCTCCATTTGTGAAAACTACATCTTCTGTACAACCACAAGACCTTGGAAGGGCTACATGGACTTTTCTTCACACTCTTGCTGCTCAGTATCCAGACGATCCTACAAGACAACAGAAGAAAGATGTAAAAGAACTGGTACAGATCTTGTCTCGAATGTACCCTTGCAGTGAATGTGCAAATCACTTTAATGAAGTTCTTAGATCAAATCCTGTACAGTCGGGGTCACATGCTGAATTTTCTCAGTGGCTATGTCATGTGCATAATGTTGTCAATAGAAGCATTGGCAAACCAATTTCCTGCATGAAAAGGCCATGGCAGAAGAAGCTGGTCGAGATTAGTGAGGTTGCATATCATTCACATCAGCCTGCAAGCAAGTACAAATCAACCCAAGTTAGCTTGCAACCATGTTCATTGCTTGACAGGAAGTGGCAAAACATCTACAATGCAACCATTACACTCAGAGCTGCGAATGACCTTGTTAGACAGTTGCATCGACCAGTTTACCGAAATCAGAAATTTAAATTGTGGTTTAGCTACTTTGAGATATATGGTGGAAAATTGTATGATCTTCTTGGTGACAGGAAGAAACTCTTAATGAAAGAGGATGGACGGCAGCAAGTTTGTATTGTAGGACTACAAGAATTTGAAGTTTCTGATGTACAGATTGTCAAAGAATTCATCGAAAAAGGGAATGCAGTAAGAAGTACAGGATCCACTGGCGCAAATGAGGAGTCCTTCAGGTCACATGCTATCTTACAACTGGTTGTAAAGAGGCACAATGTCTACTACCTTCAACCTCCAGGATTACGAGAAATTCACCGCAGTAACACAATTGAATTTGCTGGAGGTTACAAGAAATTCACTGCAGTAACACATAATAGCCAGTAA	1032	0.4021	MSKNSVQSLFHNFEKVADFVQHHVSNFIGHHIQSSGTSGIGSINASIKAPFVKTTSSVQPQDLGRATWTFLHTLAAQYPDDPTRQQKKDVKELVQILSRMYPCSECANHFNEVLRSNPVQSGSHAEFSQWLCHVHNVVNRSIGKPISCMKRPWQKKLVEISEVAYHSHQPASKYKSTQVSLQPCSLLDRKWQNIYNATITLRAANDLVRQLHRPVYRNQKFKLWFSYFEIYGGKLYDLLGDRKKLLMKEDGRQQVCIVGLQEFEVSDVQIVKEFIEKGNAVRSTGSTGANEESFRSHAILQLVVKRHNVYYLQPPGLREIHRSNTIEFAGGYKKFTAVTHNSQ*	344

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g3192	343	PANTHER	KINESIN-LIKE PROTEIN	199	313	-	-
	Psa6g3192	343	ProSiteProfiles	ERV/ALR sulfhydryl oxidase domain profile.	56	157	IPR017905	GO:0016972
	Psa6g3192	343	Pfam	Kinesin motor domain	199	309	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa6g3192	343	SMART	kinesin_4	91	343	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa6g3192	343	Pfam	Erv1 / Alr family	65	152	IPR017905	GO:0016972
	Psa6g3192	343	ProSiteProfiles	Kinesin motor domain profile.	1	343	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa6g3192	343	PANTHER	KINESIN-RELATED PROTEIN 6	199	313	-	-
	Psa6g3192	343	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	199	308	IPR027417	-
	Psa6g3192	343	Gene3D	Kinesin motor domain	182	336	IPR036961	-
	Psa6g3192	343	Gene3D	ERV/ALR sulfhydryl oxidase domain	49	160	IPR036774	GO:0016972
	Psa6g3192	343	SUPERFAMILY	FAD-dependent thiol oxidase	57	150	IPR036774	GO:0016972

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g3192	Psa-Chr6	276225401	276226720	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g3192	196	305	Calmodulin-binding Proteins	AT5G65930	32.456	1.69e-07	51.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa6g3192	6	276225401	276226720	Psa6g3192	6	276225401	276226720	ECH