Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3190 ATGGATACTTTGATTGGAAAGGAGAATGGTTTGAACATGAGGGAGACTGAGCTTTGTCTTGGTTTGCCTGGCGGAGGCGGCGGCGGCGAGGTTGAAACTCCTAGAGCTGCTGGAAAGAGAGGTTTCTCTGAGACAGTTGATTTGAAGCTGAATATTCAGACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTTTCAAAGGAGAAGAGCATGCTTAAGGACCCTGCCAAGCCACCAGCTAAGACTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGAAAGAACATGATGGCACAAAAGGTTAACAATTCTGAGGAGAATGAGAAGACAACAAGTAGCACTACTGCTGGTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTCGACTTAACAATGTACAAAACCTACAAAGATTTATCCGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAAAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGATCAGAAGCTATTGGGCTTGCACCAAGAGCAATGGAGAAATGCAAAAACAGAAGCTAA 711 0.4473 MDTLIGKENGLNMRETELCLGLPGGGGGGEVETPRAAGKRGFSETVDLKLNIQTKEDLNENLKNVSKEKSMLKDPAKPPAKTQVVGWPPVRSYRKNMMAQKVNNSEENEKTTSSTTAGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3190 236 ProSiteProfiles PB1 domain profile. 118 218 IPR000270 GO:0005515
Psa6g3190 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 229 IPR003311 GO:0005634|GO:0006355
Psa6g3190 236 Gene3D - 112 230 - -
Psa6g3190 236 Coils Coil 48 68 - -
Psa6g3190 236 Pfam AUX/IAA family 36 227 IPR033389 -
Psa6g3190 236 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 8 229 - -
Psa6g3190 236 SUPERFAMILY CAD & PB1 domains 114 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3190 Psa-Chr6 275769223 275772691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3190 105 221 B3 DNA Binding Superfamily AT3G61830 31.624 1.18e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa6g3190 AUX_IAA 9.6e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3190 K14484 - gmx:100810762 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3190 6 275769223 275772691 Psa6g3190 6 275769223 275772691 ECH
Psa6g3190 6 275769223 275772691 Psa3g1445 3 132117753 132119254 ECH
Psa6g3190 6 275769223 275772691 Psa6g1341 6 62384930 62387350 ECH