Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3179 ATGAAAAATGCATATTCAAAGAAAAGTTGGACCGGAACACTCCCTGGAATAAGTTCATTACTTCGCCGGTGCTCAGCCACTTCCATTTCTCAGTACACCAGCGGAGACATGCGTGCCACGTTCATCTTTTCGCAACTTTCTCCCCTAAATCGACAATCTCACCGCCTTAACTTTAGCCTTTCCTTCGCATCGGTGACTTGGCCGGTGAAAGAAGAACACGACGACGAATTCCCATACTCCGACGTTCCCAACCCTAGCCGGATAAATTCGGAGAGGAAGCCGTACGTGACACCAATGAAGGTTCTGATTGCAAGGGCGAAGGCAGAGAGGGAAGCTCGAAAGGCACAACCTTGTAGAGTTCTGGAAGAACCTCCCGATAACGGATTGCTGGTGCCGGAGCTTGTGGAAGTTGCTCATCGTGTCTATCGTGCTCGAGGCTATCTACTTTCTGGTTTGGGTCAACTCGTCCGAGCCATTCCTGTCTTACGCTGCGAGCTTTGTAACGAGGTTCACATTGGTTATGTTGGTCATGAGATTCGAACATGTACTGGACCAAAAAGTTGGCTGCAGAATGCAACTCATGTTTGGAGAAGGGGAGGTGTTCGAGACGTGTTTCGTTTCCCAAAATGCTTTCATCTCTATGATCGTGTTGGCAAACCAAGGGTTGGGCATGATGAGAGGTGCAAGAAGATCATGGAGAAGTATTTTGTGAATGCTTGTGGATATTGTCCTGGGTTCAGATTGCTTCCAGTTCTTGGAACTCCGTACTTTCAAAAGCCTCATTCAGAAGAAGATAAGCTTTTGGGCAGGAATTTTGGGTATATTCAAAGGGTCTGTCAGGAGGGTAAAGGAGATTTTGGTTTGGAGAAAAGGAAAATAAGCTTCAGCAAAAGTTATCCTTGTTTCTCCATCAAGAAGAACATGTGGTTCCGACTTGTGAAGATGTTTACATCAAGGAAGAAAATCAGCAAGGACAAGGGTGCTGAACCTACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTTGAAAACACCAACCATGAGTTGAAGAGCGAGTTGAAAGATTTATACATAAACTCTGCAGTCCAAGTTGATGTTTCTGGCAACATCCATGTCCCATACAGATTGAGGAAGGGTTTCCGCAAAATTCATGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGATGTAATCCTGATTGCCACCAGGAGAATTGTAAGACCCCCAAAGAAGGGTTCAGCTGCTCAGCGCCCCCGCAGCCGAACACTCACTGCTGTGCATGAGGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAACGCACTAGGTACCGAGTTGATGGATCCAAGATCATGAAGCATGCTAAAGAGAGACATGATGTTGAGTTTGTGTTGACGGAATTTTTGTGCTCCTCTTATGCCGGTGTTTTTGGACCCAAAGGAAAGAAACAACACTGA 1482 0.4602 MKNAYSKKSWTGTLPGISSLLRRCSATSISQYTSGDMRATFIFSQLSPLNRQSHRLNFSLSFASVTWPVKEEHDDEFPYSDVPNPSRINSERKPYVTPMKVLIARAKAEREARKAQPCRVLEEPPDNGLLVPELVEVAHRVYRARGYLLSGLGQLVRAIPVLRCELCNEVHIGYVGHEIRTCTGPKSWLQNATHVWRRGGVRDVFRFPKCFHLYDRVGKPRVGHDERCKKIMEKYFVNACGYCPGFRLLPVLGTPYFQKPHSEEDKLLGRNFGYIQRVCQEGKGDFGLEKRKISFSKSYPCFSIKKNMWFRLVKMFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRVDGSKIMKHAKERHDVEFVLTEFLCSSYAGVFGPKGKKQH* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3179 493 PANTHER 40S RIBOSOMAL PROTEIN S7 259 476 - -
Psa6g3179 493 PANTHER 40S RIBOSOMAL PROTEIN S7 259 476 IPR000554 GO:0003735|GO:0005840|GO:0006412
Psa6g3179 493 Coils Coil 341 361 - -
Psa6g3179 493 Pfam APO RNA-binding 76 229 IPR023342 GO:0003723
Psa6g3179 493 Pfam Ribosomal protein S7e 321 467 IPR000554 GO:0003735|GO:0005840|GO:0006412
Psa6g3179 493 ProSitePatterns Ribosomal protein S7e signature. 388 401 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3179 Psa-Chr6 274713555 274719947 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3179 315 486 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 70.000 1.93e-81 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3179 K02993 - ccaj:109815669 298.516