Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3177 ATGTATTCAGGAGTGATGGAAAGAAACACAGAATGGAGTGTTGTAGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAGTATGTCAAGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGATTGAGAAGAAATGGAAAAAGCTGTAGATTGAGATGGGTGAACTATTTGAGACCAGACCTTAAGAAGGGCCAGATTACACAACAAGAAGAAAGCATAATCCTAGAGCTTCATGCTAGGTGGGGAAATAGATGGTCAACGATTGCGAGAAGCTTGCCGGGAAGAACAGACAATGAAATAAAGAACTATTGGAGAACTCATTTCAAGAAAAAGACTAAAAAACCATCTGATGCTGCTGAAAGGGCGAAAAATCGCTCTTTCAAGAGGCAGCAACAACAGTTGAAACAGCAACAGCACCAAATTCAGCAGCAGCAGCAACTGCAATACAATTTGGACATGAAAGGGATTATAGACTTGTTGCTTGATGAAAATGACTACTATAGCGTTCCTTCTACTTCTCAAGAGAGTCAAGAAATGGTTACCATATATTCAGAAACACCAGAACAACAAGGTTACTCTTACTCTATGCTCAATGGTAACGGCAATGGTAATGTTTATGCACAAGAGTCCTCAAATGAAGAAATTTTGTGGGATGGACTTTGGAATTTGGATGATGTTCTTGGAAATTCAATGCAACCTATGATGCTACAAGCAAAGACAGCCAATGTGCACAACTTAGTTACTCCCTTTTGTTAA 792 0.4015 MYSGVMERNTEWSVVEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKKPSDAAERAKNRSFKRQQQQLKQQQHQIQQQQQLQYNLDMKGIIDLLLDENDYYSVPSTSQESQEMVTIYSETPEQQGYSYSMLNGNGNGNVYAQESSNEEILWDGLWNLDDVLGNSMQPMMLQAKTANVHNLVTPFC* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3177 263 MobiDBLite consensus disorder prediction 125 139 - -
Psa6g3177 263 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Psa6g3177 263 CDD SANT 24 69 IPR001005 -
Psa6g3177 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Psa6g3177 263 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Psa6g3177 263 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Psa6g3177 263 Coils Coil 136 159 - -
Psa6g3177 263 SMART sant 74 122 IPR001005 -
Psa6g3177 263 SMART sant 21 71 IPR001005 -
Psa6g3177 263 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Psa6g3177 263 CDD SANT 79 120 IPR001005 -
Psa6g3177 263 Gene3D - 22 74 - -
Psa6g3177 263 Gene3D - 79 123 - -
Psa6g3177 263 PANTHER MYB TRANSCRIPTION FACTOR 1 248 - -
Psa6g3177 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 248 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa6g3177 263 MobiDBLite consensus disorder prediction 122 151 - -
Psa6g3177 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Psa6g3177 263 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3177 Psa-Chr6 274442029 274443353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3177 17 263 MYB Transcription Factor Family AT3G24310 57.588 9.62e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g3177 Myb_DNA-binding 8.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3177 K09422 - gmx:100782089 352.443