Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3152 ATGAATTATAACAACAAAGACAAGGCTCCTGGGAATTGGCATAAGAAGGATGATTACGGTCTCCAGAGGTCGTCGAATTTTGACATTTCGCAAGAGCTGCGGAATCAAGTTCCTCGAAATGAAGATCTTCCTATCGTGCTTGATGATGAAACAACCCCTGTAAAGGCTTGTGAGGATTTTGCATACAGTATCAATAATGGTGAATCAAATGATATTCAAAAGGAAGAGAACGGGAATCATTCCCTTGCTGATGTACAAATGTCTTCGGCATATTTGGAATTAAATGGGACGGGCAACTCCAATGCGGATATTTTCCCAGAAGTGTCACAATGGATATCTGACGTTTCAGATAGTGCTTCTGCTACCAATTACGAGGACTTACAGTCAGCTGAAAGGTGGCTTGCAGATTGCTTCAAGGATACTGATATGCAAATATGTCATGTGAATCCGAATTTTTCTGTGGCAAATAATGTTCATGCTGATGTTACTGGGTTCTCCAACTTAACACCGCCGCCAGTTGAGCAGAATACCACAACCGGTAACCGTATGTTTGATGCATTCAAGGGAGCTTTGGATGGAGGTTTGGATATTCCTCATAGTGACAAAGGGTTTGCTGGCTTTGACAAGATGACATTGTATTCTAAAAGAGTTTCAAATTCAGACTCTGAGCAACCTCTCGGATCTTCAGACTCTCTCGGTCAAGGAAAGGATGACAAAATAGAGTCGCTGCTAGGATCTTCGGCAACAGGAACCCTTGGAAGCTCGAATGATGATGATTCCTCTGAGGTAGCTATGCTTCTTGCGATAGGTGAGGGAGAAATAAAACAGAGGAAGAAGTATTGGAATGAGCACAGGGCCTCTAACAGTGAAAAATCTTGTAGCCTCATTGATTATGCACTCCGGGTACCATCAGTATCTGCAAATGTTGTGGATACTGATGATGAAAACTGTTCTAGTGAATCAAGAACTTCCTCTACTATTTTCCCCGATCAAAGCAAGGTTGTAGCAATGGATAAATCACTTCTGTAG 1029 0.4208 MNYNNKDKAPGNWHKKDDYGLQRSSNFDISQELRNQVPRNEDLPIVLDDETTPVKACEDFAYSINNGESNDIQKEENGNHSLADVQMSSAYLELNGTGNSNADIFPEVSQWISDVSDSASATNYEDLQSAERWLADCFKDTDMQICHVNPNFSVANNVHADVTGFSNLTPPPVEQNTTTGNRMFDAFKGALDGGLDIPHSDKGFAGFDKMTLYSKRVSNSDSEQPLGSSDSLGQGKDDKIESLLGSSATGTLGSSNDDDSSEVAMLLAIGEGEIKQRKKYWNEHRASNSEKSCSLIDYALRVPSVSANVVDTDDENCSSESRTSSTIFPDQSKVVAMDKSLL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3152 342 PANTHER PROTEIN XRI1 76 178 IPR039933 GO:0007140|GO:0007143
Psa6g3152 342 PANTHER PROTEIN XRI1 1 77 IPR039933 GO:0007140|GO:0007143
Psa6g3152 342 MobiDBLite consensus disorder prediction 1 25 - -
Psa6g3152 342 PRINTS Ribosomal protein L5 signature 169 188 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa6g3152 342 PRINTS Ribosomal protein L5 signature 189 208 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa6g3152 342 PANTHER INDUCED TRANSCRIPT PROTEIN, PUTATIVE-RELATED 76 178 - -
Psa6g3152 342 PANTHER INDUCED TRANSCRIPT PROTEIN, PUTATIVE-RELATED 1 77 - -
Psa6g3152 342 Gene3D - 173 222 - -
Psa6g3152 342 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 176 200 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Psa6g3152 342 SUPERFAMILY Translational machinery components 177 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3152 Psa-Chr6 272057176 272059074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3152 176 209 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.353 3.37e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3152 - - gmx:100779466 192.2