Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3147 ATGGATTCTTTAGAGTTAGGAAACACCGATTCTTGGGATTTTCTCGATTACTCATTCATCGATCCTCCTCCCACCGATTTCCTTTGGTCCAATCCAAGTGACTTTGCAAGTGTGAACACGGAAATTGACATTCGAAGCAGTGATTTTGCGAGTGTGAGTGCGGAGATTGACATTCCAAGTGGTGTTGTTGCGTGTCAAGAAGAGAATACCAGGAAGAGGGGACGTGCTGAATCATGCTATAAGGCAGGAACAAAAGCTTGCCGTGAGAAATTGCGTAGGGAGAAACTCAATGAAAGGTTTTGCGATTTGAGCGCTGTTTTGGATCCCGGGAGACCTGTGAGAACAGATAAGCCTGCTATACTTGATGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTGAGGAACTCAAAGAAACAAATGAAAAATTGTTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTCCGCGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATCGAGAAACAGCTGAAAACTTTGCCTATTTCACCAGCAGGATTTATGCCTCCTCCTCCTATGGCTGCTTATCAAGCAAGGGTGAACAAGATGGCTGTTTATCCAAACTATGGATATATCCCAATGTGGCAATATCTTCCTCAATCAGCTCGCGATACATCCCAAGATCACGAGCTCAGGCCTCCTGCTGCATAG 711 0.4304 MDSLELGNTDSWDFLDYSFIDPPPTDFLWSNPSDFASVNTEIDIRSSDFASVSAEIDIPSGVVACQEENTRKRGRAESCYKAGTKACREKLRREKLNERFCDLSAVLDPGRPVRTDKPAILDDAIRVLNQLKTEAEELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKTLPISPAGFMPPPPMAAYQARVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3147 236 Coils Coil 235 236 - -
Psa6g3147 236 Pfam Helix-loop-helix DNA-binding domain 84 131 IPR011598 GO:0046983
Psa6g3147 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 131 IPR011598 GO:0046983
Psa6g3147 236 Coils Coil 121 176 - -
Psa6g3147 236 Gene3D - 84 164 IPR036638 GO:0046983
Psa6g3147 236 SMART finulus 86 137 IPR011598 GO:0046983
Psa6g3147 236 CDD bHLH_AtILR3_like 85 160 - -
Psa6g3147 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Psa6g3147 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 145 IPR036638 GO:0046983
Psa6g3147 236 PANTHER TRANSCRIPTION FACTOR BHLH104 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3147 Psa-Chr6 271149085 271152453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3147 70 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.833 1.60e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g3147 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3147 - - mtr:MTR_1g043430 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3147 6 271149085 271152453 Psa6g3147 6 271149085 271152453 ECH