Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3146 ATGGAATTACAGAAGCTGCTGCTGGGTCGGAATGCTGAGGAGATGAAGAAACTTCAGCAGAAAAATAGATCCTCAAGTTTTGATGGAGTTAGTGTTTTGGACCGACCGGATCGACTCACTGATATTGCACCAGGACGGGGCTATCAAATGCATTTGCCTGTTGGGTTTTCTTCCTTTGAGAGCTTTTCTCAGGCCCTAATATTGTCTGCCCCGGATTGTGGAGATGTCAACAGTAGTCCAGTTGGTAACGATGTGATGGATGTTTCAGATCAAATGCATTTGCCTGTTGGGTTTTCTTCCTTTGAGAGCTTTAACCCAACTTCTCCACCAGTCATGGAGGAGTGTCCTAACAAAGATCAAGATAACTTGAATAACTCTATGTCAATGGGTGCAACTAATCAAACTCAAATGTTGTATTCAGGGGAGTTTGATCATATAATAAAAGCTGAAGCAATGATGACATTTGCCCCTGAATTTGGTGTCGTTGAGGCCCCTACTAGTGGGTTATCCACAACATTATTCAGAAGCCCTTACTTTTCAAAGTCTCGAAAAGCAGAGAGTTCAAATTCTTGTTCAAACAATTACTTGTATGGCGCCGAGCCACCGTCTTCTTCCTATATTGAAGGATCAGAGGGGAAGAATGGACTGGTTATCAATACAAAAACATGTTCCGGAAAAAATGATACAATTGCAGGTGTTGTTAACAACATTGCTAAATCTGAGGGGATAATGCAACCTCCGTTCTCGAACATTGGTTCTAATGCCTCTGTCAAGTCTGTTTTAAGGAAGATTACTGAAAGCACAAAGGACACTGAAGGCACAAAGGACGCAGAGCATTTTACTCTATCTGCAAAAACATTATTGGCAACTGATGTTACCTGTGCTATGTCACAAGCTTCCATGTGCAGGTTACGACACACACTCTTGTCTTCTGGTAACAACCTCATTCCTGTTGGTTTGAGCAGGTCCACTGGGGTTACGTTTTCTAATCAGCTTCCTAATGACCCGAGTACCACTACAGATAACATATCTGGCAAGTACGAGGTAAAAAAGGGGCTAAAATCTTCAGAGCCTCTCAAAGTTGACCAACCACTTAAGACAACTAAGCAGGTTGCTAAGAGTCGACAAAAGACTGTGCGTAAAACCCAAAGTCTTGCTCAACTGGCTGCTTCTAGAATCGAAGATGCTGTTAGCTACAGAATACCATTTGTTAGCGACATACCGACCATAATTTTTGGAGCGGATGTTACGCATCCTGAAAATGGAGGAGACACTAGCCCCTCAATAGCAGCTGCTGTAGCATCCCAAGATTGTCCTGAAGTGACAAAATATGCTGGCTTAGTGTGTGCTCAAGCTCACAGACAGGAACTTATACAAGATTTATACAAAACGTGGCATGATCCTGTTCGCGGCACTATGTTGCTTGAAGTTGTTGATGCTGCTGATGGGACGCCAAGCGCTTCATGCGTGAAGGATCATGTTGTGAAAAGCACACCGGATGATATCAATCTAACCAAGCTGCGACTCCTAGAGATATTGAGGATTTTGGCAGACGACTCTCTTTGGGATCTTCTACATGGTCCGCTGAAGGTAAAACTTGATTGGGAAACACGGATGAGGATTGTTGTTGGAGTTACTGAAGGACTTGCTTATCTTCACCATGACTGCAACCCTCGAATTGTTCACAGGGACATTAAGTCTTCAAATATTTTGCTGGATGAAAACTGTGAAGCTCATCCTTCTGATTTCGGCACTGCAAAATGCATCCCAGCCACAAAAACTCATGCCTCCAACTCTGAGATTTGTATTGGATGGAGGAATGCCAATTTAACTATGGAAGAACGAATGAACATTGATGCAACTGACAAAGATAATGAATTGGCTGCAACTGAGTATATTTATGATATTTACAAGTTTTACAAACTCAGTGAAGATGACTGTCCTGTACATGATTACATGGTTTCACAGCCGGATATAAATGCTAAGATGAGGGCGATTCTTATTGATTGGTTGATTGAAGTTCATCGAAAATTCGAACTCATGCCAGAAACTTTCTATCTAACTCTTAACATAGTTGACCGATTCTTGTCCATGAAGGTTGTTCCTAGAAAGGAATTTCAGCTTGTTGGCATAAGCTCAATGCTTATTGCATCTAAATATGAAGAGATATGGGCACCAGAGGTTACAGATTTTGTATGCATATCAGACAATGCTTATGTTAGAGAACCGGTTTTGGTTATGGAGAAAACAATCCTTTACAGATTTTTTCCTACTCCTTATGTCTTTCTGGTTCGGTACATCAAAGCCTCCACTCCCTCTGATGAACAGATGGAAAACATGGTGAATTTCCTAGCTGAACTTTCTATGATGCATTATGTTACTGTATCATCGTATAGTCCTTCGATGATTGTTGCTTCTGCTGTTTATGCGGAGCCATGGTATGGAACTGCATATTCCATTGAAAAGATCACTGCCTCAACAATTCAGGGGTGGGTGCTTTCCGCTCCTAACAAAAATGTGCATCTTCCAGCTCCTAACAAATTCATTCCAACTGACTTGTCTCTTAAAGTTACGCCAGAGAAAGTGAAATTTCCAGTTTTGTTAAGCAGGTCTTCTTATTCAGCATTATGGTACAAGCCAGATACATTGTTTTCCACACCAAAGGCTTATGTTAAGATTAATTTCAATTGCCCATATGCTGGAAACTCTCCTCAGGTTGTTGGTTTGTATTATAGCATAAGCCATACAGACCCCGGTTTCCAGGTGAATCTCCTTGGTTATAATCAAAAATTAAGGATTCTACTTGAAACTATTGTTGAAGAGATAGCAACATAG 2835 0.4127 MELQKLLLGRNAEEMKKLQQKNRSSSFDGVSVLDRPDRLTDIAPGRGYQMHLPVGFSSFESFSQALILSAPDCGDVNSSPVGNDVMDVSDQMHLPVGFSSFESFNPTSPPVMEECPNKDQDNLNNSMSMGATNQTQMLYSGEFDHIIKAEAMMTFAPEFGVVEAPTSGLSTTLFRSPYFSKSRKAESSNSCSNNYLYGAEPPSSSYIEGSEGKNGLVINTKTCSGKNDTIAGVVNNIAKSEGIMQPPFSNIGSNASVKSVLRKITESTKDTEGTKDAEHFTLSAKTLLATDVTCAMSQASMCRLRHTLLSSGNNLIPVGLSRSTGVTFSNQLPNDPSTTTDNISGKYEVKKGLKSSEPLKVDQPLKTTKQVAKSRQKTVRKTQSLAQLAASRIEDAVSYRIPFVSDIPTIIFGADVTHPENGGDTSPSIAAAVASQDCPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTMLLEVVDAADGTPSASCVKDHVVKSTPDDINLTKLRLLEILRILADDSLWDLLHGPLKVKLDWETRMRIVVGVTEGLAYLHHDCNPRIVHRDIKSSNILLDENCEAHPSDFGTAKCIPATKTHASNSEICIGWRNANLTMEERMNIDATDKDNELAATEYIYDIYKFYKLSEDDCPVHDYMVSQPDINAKMRAILIDWLIEVHRKFELMPETFYLTLNIVDRFLSMKVVPRKEFQLVGISSMLIASKYEEIWAPEVTDFVCISDNAYVREPVLVMEKTILYRFFPTPYVFLVRYIKASTPSDEQMENMVNFLAELSMMHYVTVSSYSPSMIVASAVYAEPWYGTAYSIEKITASTIQGWVLSAPNKNVHLPAPNKFIPTDLSLKVTPEKVKFPVLLSRSSYSALWYKPDTLFSTPKAYVKINFNCPYAGNSPQVVGLYYSISHTDPGFQVNLLGYNQKLRILLETIVEEIAT* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3146 944 Pfam Piwi domain 403 464 IPR003165 GO:0003676
Psa6g3146 944 CDD CYCLIN 757 809 IPR013763 -
Psa6g3146 944 PANTHER CYCLINS 608 810 IPR039361 -
Psa6g3146 944 Gene3D - 846 944 - -
Psa6g3146 944 Pfam Cyclin, N-terminal domain 635 752 IPR006671 -
Psa6g3146 944 Pfam Protein kinase domain 513 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3146 944 SUPERFAMILY LuxS/MPP-like metallohydrolase 791 845 IPR011249 GO:0046872
Psa6g3146 944 SUPERFAMILY Cyclin-like 624 752 IPR036915 -
Psa6g3146 944 SMART cyclin_7 761 837 IPR013763 -
Psa6g3146 944 SMART cyclin_7 669 753 IPR013763 -
Psa6g3146 944 ProSiteProfiles Protein kinase domain profile. 365 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g3146 944 ProSitePatterns Cyclins signature. 664 695 IPR006671 -
Psa6g3146 944 Pfam Middle or third domain of peptidase_M16 778 905 IPR032632 -
Psa6g3146 944 Gene3D - 649 755 - -
Psa6g3146 944 PANTHER CYCLIN-B1-4 608 810 - -
Psa6g3146 944 SMART Cyclin_C_2 757 859 IPR004367 -
Psa6g3146 944 CDD CYCLIN 663 752 IPR013763 -
Psa6g3146 944 Gene3D - 635 810 - -
Psa6g3146 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Psa6g3146 944 SUPERFAMILY Cyclin-like 758 810 IPR036915 -
Psa6g3146 944 Gene3D - 400 493 IPR036397 GO:0003676
Psa6g3146 944 SUPERFAMILY LuxS/MPP-like metallohydrolase 846 942 IPR011249 GO:0046872
Psa6g3146 944 Pfam Cyclin, C-terminal domain 757 810 IPR004367 -
Psa6g3146 944 Gene3D Transferase(Phosphotransferase) domain 1 494 611 - -
Psa6g3146 944 SUPERFAMILY Protein kinase-like (PK-like) 515 596 IPR011009 -
Psa6g3146 944 ProSiteProfiles Piwi domain profile. 409 478 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3146 Psa-Chr6 271100948 271106455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3146 573 810 Core Cell Cycle Gene Families AT2G26760 55.061 2.09e-82 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Psa6g3146 Peptidase_M16_M 5.6e-29 CL0094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3146 - - gmx:100781873 382.489