Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3145 ATGGATGAGGAGGATACAAATCATAAAAAAGATGAAAAGGATCATCAAGGTGTCACTGTTGCACTACATATAGGGTTACCAAACCCTAGCGCTGCTGAGATTGCAAATATGATGATTTCTTCATCTTCTTCTGAAATGATCAATGAAAGAGATCAACAACAACAACAACAGCAACAAGAACAAGGAGGTGCTATAAGTGAGGATTCTTCATCTTATGATTTGTTGAGCAGTAGTAATAGATCATTGAACAAGGGTCAATTTTGGATCCCTACACCTTCTCAGATTCTAATCGGTCCTACACAGTTTTCTTGTCCAGTTTGCTGCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGCTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCGAAGCCGTTGAAAGATTTCAGAACACTTCAAACACATTATAAGAGAAAACATGGAATTAAGCCTTTTATGTGTAGAAAATGTAGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAAAATTGTGGGAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGATCACTTAAAGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATTGATCGTTTTGAGGAAGAAGATGAACCTGCTTCTGAAGTGGAACAAGATAATGATTCCACTCAGACTCAGTAG 798 0.3835 MDEEDTNHKKDEKDHQGVTVALHIGLPNPSAAEIANMMISSSSSEMINERDQQQQQQQQEQGGAISEDSSSYDLLSSSNRSLNKGQFWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDRFEEEDEPASEVEQDNDSTQTQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3145 265 MobiDBLite consensus disorder prediction 34 76 - -
Psa6g3145 265 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Psa6g3145 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Psa6g3145 265 SUPERFAMILY beta-beta-alpha zinc fingers 98 124 IPR036236 -
Psa6g3145 265 Gene3D Classic Zinc Finger 101 124 - -
Psa6g3145 265 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 5 262 - -
Psa6g3145 265 Gene3D Classic Zinc Finger 164 240 - -
Psa6g3145 265 PANTHER ZINC FINGER PROTEIN WIP2 5 262 IPR043584 GO:0003700|GO:0010468
Psa6g3145 265 MobiDBLite consensus disorder prediction 1 76 - -
Psa6g3145 265 SUPERFAMILY beta-beta-alpha zinc fingers 168 206 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3145 Psa-Chr6 271007989 271010054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3145 18 265 C2H2 Transcription Factor Family AT3G57670 73.846 1.52e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g3145 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3145 - - gmx:100802907 420.239