Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3143 ATGGATTATTCCTGCAATTTCTTTTCACAAGATTCATTCACTTTGAATCCAAAAACCCACCACGAGTTTCTCCCCTTCAACGAAAACGACCCAGAAGAGATGCTTCTATACGGCATGATAACATCATCATCATCACAGCAACAACAACAACGAAAATTCATCAGCAGTAGCAAAGAAACAACATTAAAGAGCAACAAAGAGAAGAACACCAAGTCCTACCGCGGCGTTCGACGGAGACCGTGGGGGAAATTCGCGGCGGAGATAAGAGATTCCACTCGGCATGGCATAAGGGTCTGGCTTGGAACATTTGATAGTGCTGAAGCAGCAGCACTTGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCTGCTGCAATACTTAATTTTCCGGTTGAGAAGGTTAGGGAATCACTCAGGGACATGAATTATGATGATCAGTGTTGTTCGCCGGTTGTTGCTTTGAAGAGGAAGCATTCGATGAGAAGGAAAATGGATGAGAAGAAGAAGAAACATGACAGAGATGTTGGGATAGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGAGTATTTGGAACAGTTGTTGATGTCTTATTGTTGA 600 0.4233 MDYSCNFFSQDSFTLNPKTHHEFLPFNENDPEEMLLYGMITSSSSQQQQQRKFISSSKETTLKSNKEKNTKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEKVRESLRDMNYDDQCCSPVVALKRKHSMRRKMDEKKKKHDRDVGIDNLVVFEDLGAEYLEQLLMSYC* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3143 199 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Psa6g3143 199 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Psa6g3143 199 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Psa6g3143 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 197 - -
Psa6g3143 199 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Psa6g3143 199 MobiDBLite consensus disorder prediction 54 74 - -
Psa6g3143 199 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Psa6g3143 199 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Psa6g3143 199 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
Psa6g3143 199 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Psa6g3143 199 PANTHER DNA-BINDING DOMAIN 16 197 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3143 Psa-Chr6 270816132 270817180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3143 24 197 AP2-EREBP Transcription Factor Family AT3G23240 66.111 1.56e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g3143 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3143 K14516 - qsu:111996147 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3143 6 270816132 270817180 Psa6g3143 6 270816132 270817180 ECH