Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3142 ATGCATCACTTGCTAGGGAACAGATGGTCAGCAATAGCAGCAAAGTTACCTGGAAGAACAGACAATGAAATCAAAAATGTATGGCACACACATTTGAAGAAGAGACTATTGAACACCAATAATAACCAAACAAACTCAAATACCAAAAAAAGAGTATCAAAACCAAAAATCAAAATATCTGATTCTAATTCAAATTCAAGCTGTTTAACTCAATCATATGAACCTTCTAATGCTCCTAACTATTTCCTTGAAATGGAAACTACATCATCAAATGACACTTTTTCTAGTGATTTTTCGTTACAAGGAAAAAATATTGACAATATCATCAATTGGGAAGATCCTGAAGACTCACTTGTGACAATGCTTGAAATAGATGAAAGCTTTTGGTCAGAGACAATAACTACTGATGATGAAATTAGTTCCACCATACCATTGAATACTGAATTACCAAATCAACATTACCCTTTAAATAATTCATTTGAAAATTTCCAAAACCAAGAGGGTTATGGTTATAGTTCAAACTCCATAGTTAATGATGATGGAATGGATTTCTGGTATGACTTGTTCATCAGATCAGGGGAATCTATAGAACTGCCAGAGTTCTAA 606 0.33 MHHLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTNNNQTNSNTKKRVSKPKIKISDSNSNSSCLTQSYEPSNAPNYFLEMETTSSNDTFSSDFSLQGKNIDNIINWEDPEDSLVTMLEIDESFWSETITTDDEISSTIPLNTELPNQHYPLNNSFENFQNQEGYGYSSNSIVNDDGMDFWYDLFIRSGESIELPEF* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3142 201 CDD SANT 1 32 IPR001005 -
Psa6g3142 201 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Psa6g3142 201 Pfam Myb-like DNA-binding domain 2 32 IPR001005 -
Psa6g3142 201 MobiDBLite consensus disorder prediction 38 72 - -
Psa6g3142 201 SUPERFAMILY Homeodomain-like 2 40 IPR009057 -
Psa6g3142 201 Gene3D - 1 65 - -
Psa6g3142 201 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 192 - -
Psa6g3142 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 36 IPR017930 -
Psa6g3142 201 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 192 - -
Psa6g3142 201 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3142 Psa-Chr6 270650158 270651678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3142 1 193 MYB Transcription Factor Family AT3G23250 36.715 2.54e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g3142 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3142 K09422 - gmx:100806975 150.984