Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3130 ATGCTATCCGGAAGCATTGAATCGAAAGAATTGTCTTTATCAGCATTGGTCAAACTAGCAGGAGTTCATGCCAATAAGGGAATTGTTGCTGCATATGGAGGTGTCCCCATTCTCCTAGATTTAATGTTCTCCCTTCGGACACGAGCGTTCATTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTTCTTCTGATGGATATGGTTTCTTTATTGACGGAGAAGGGAAACAACTCGAGTTAGATAACATAATCACCAATTTGCTAGCTCTGCAGCAGCTTCCTAACTCAGCTCAGTACTTCCGGAAGCCTGCATTGCGCGCTCTTCTCGGCATTTGCAAGTTTGAGACAGGTTTAGTTAAGAAGGCGGTTCTGGCCGCGCACGGTGTACCACTAATTCTTCCCCTTCTTGATGACTCTGACTCAGAAATCAGGGAAACTGCCGTTAGTCTTCTCTTTCTTTTCTCGCAACAAGAACCAGAAGGAGTTGTTGAATACCTCTTCAGGCCCAGAAGACTTGAAGCTTTAGTTGGGTTTCTTGAGAATGACGAAAATAATAATGTACAAGTAGCTGCTACTGGTTTACTAGCTAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATTGACTTAGGTGGCCTTGATGCAATTATAAACATTTTGAAAAACGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTTAGGTTCACAGATCCCACAGATATCAACATAGACCAAAAAGAAAAGAAATCAATCGGTGAACTTGAACAAGAATTTCTTCAAGCACTTCAAGCATTCTACTATGAGGGAAAGGCTACTATGTCGAATGAAGAATTCGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAGAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAATCCAATCTTGACTGATAAAGAGTTTGATGAATTAAAACTCAAGCTAAAGATGGAAGGGAGTGAAATTGTGGCCGAAGGTCCTCGGTGCAGTCTCCGTAGTAAAAAGGTTTATAGTGACCTTACTGTTGATTATTTCAAAGCATTGTTACTGAAAGTTCCAGCAACTGTGCTTGCATTAGGATTGTTCTTCTTTCTTGATGATGTAACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAGCCTTTCAGTTTCATCTTGACTTGGTTTGCTGCAGTTCCTTTCATTCTGTGGTTAGCACAGTCAATTACAAATGCAATCATTAAAGATTTCTTGATTTTGAAGGGTCCATGTCCTAATTGTGGTACTGAAACACCTCATTCTTGGGACTATATTGTCAATTTCAAGTGGTGA 1374 0.401 MLSGSIESKELSLSALVKLAGVHANKGIVAAYGGVPILLDLMFSLRTRAFISIKCFEILEKLSSSSDGYGFFIDGEGKQLELDNIITNLLALQQLPNSAQYFRKPALRALLGICKFETGLVKKAVLAAHGVPLILPLLDDSDSEIRETAVSLLFLFSQQEPEGVVEYLFRPRRLEALVGFLENDENNNVQVAATGLLANLPKSERKLTMQLIDLGGLDAIINILKNGTMEAKENALSALFRFTDPTDINIDQKEKKSIGELEQEFLQALQAFYYEGKATMSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGNPILTDKEFDELKLKLKMEGSEIVAEGPRCSLRSKKVYSDLTVDYFKALLLKVPATVLALGLFFFLDDVTGFEINYLIAIPEPFSFILTWFAAVPFILWLAQSITNAIIKDFLILKGPCPNCGTETPHSWDYIVNFKW* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3130 457 SUPERFAMILY ARM repeat 4 251 IPR016024 -
Psa6g3130 457 SMART arm_5 203 244 IPR000225 GO:0005515
Psa6g3130 457 SMART arm_5 160 202 IPR000225 GO:0005515
Psa6g3130 457 SMART arm_5 118 158 IPR000225 GO:0005515
Psa6g3130 457 PANTHER PGR5-LIKE PROTEIN 1A 249 447 - -
Psa6g3130 457 Gene3D - 1 272 IPR011989 -
Psa6g3130 457 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 249 447 IPR039987 GO:0009535|GO:0009773|GO:0016730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3130 Psa-Chr6 269458849 269461299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3130 2 259 U-box Gene Family AT2G28830 26.054 4.75e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3130 - - gmx:100816935 382.104