Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3116 ATGGTGTCGACGAGTTTCCTTTCTGTGTCCTTCTTGTCAGTTGGGAGACGGAGAATTTTTCAAGTGAGGCGCTTGAAGCTGCCCGTGTTGCTTTGCAACAAGTACATGACAAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGGGTCAGGGTTCACCCATTACATGTTCTTAGGATTAATAAGATGCTTTCTTGTGCTGGAGTTGATAGGCTTCAGACTGGTAAGCGAGGTGCTTTCAAAAGCCATATGGTGTTTGTCCTAGTGTGGCTATTGGACAAGTGCTTCTCTTTGTCCGCTGCAAGGATAGCAATGGCCAAAATGCTCAGGAGGCTCTTCGTCATGCTAAGCTTAAGTTCCCTGGTCGTCAAAAGATCATTGTCAGTAGGAAGTGAGGGTTCACCAAGATTGATAGTAACGGTTATTTGA 426 0.4531 MVSTSFLSVSFLSVGRRRIFQVRRLKLPVLLCNKYMTKFAGKDAFHLRVRVHPLHVLRINKMLSCAGVDRLQTGKRGAFKSHMVFVLVWLLDKCFSLSAARIAMAKMLRRLFVMLSLSSLVVKRSLSVGSEGSPRLIVTVI* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3116 141 PANTHER 60S RIBOSOMAL PROTEIN L10 30 80 IPR001197 GO:0003735|GO:0005840|GO:0006412
Psa6g3116 141 SUPERFAMILY Ribosomal protein L16p/L10e 31 108 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa6g3116 141 Pfam Ribosomal protein L16p/L10e 28 85 IPR016180 GO:0003735|GO:0005840|GO:0006412
Psa6g3116 141 Gene3D Ribosomal protein L10e/L16 22 88 IPR036920 GO:0003735|GO:0005840|GO:0006412
Psa6g3116 141 PANTHER 60S RIBOSOMAL PROTEIN L10 30 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3116 Psa-Chr6 266764316 266764741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3116 25 79 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 78.182 3.26e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3116 K02866 - csin:114317036 98.5969