Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3092 ATGAATAATAGACGAAGAAATACTAATTTGTTAGATCTGGACAACATTCATGAAGAGTCTTCATTAGGCGAAGGACCATCTGAGTCTATTCATATTCCCATAAATTATCTTGAGGAAATTGATGACGATGTTGTCGAATGTTCACCTCGATCTTTTGCGCAGGTTGCGGCCAATGCAGGGAGTAATCGTAGAAGGATTGCAATTGACTTCAATTCGGAAAATCCAACTCTCCCATCAGAGAATATAGAGAATCAAACTGTTCCAACATCTGTTATGCATTCTACAGCTAATATAACTGAACCAATTGGTCAAAATACTATAAATTTGGAAGTCAGCATCAATGAAGCTGCTAAAAATGACAAAAAGTCACTAGAAACAAACAAGGAAGTGTTTGAGCCTAAGATTCAAGCAGTTGAGACTCCAAAAGAGCTTGCCTTAAACTGTCCACTATGTAGGAACCCTTTTGTGGAGGAAATGTCAACAATGTGTGGCCATATTTTTTGCAAGAGTTGCATCAAAAATACAATATCAAGACATAGAAAATGTCCTACATGTAGAAAAAGGCTTACTTCTAGAGGATTAAGAAGGGTGTTTCTTCCGTCTTCCAATTGA 612 0.3709 MNNRRRNTNLLDLDNIHEESSLGEGPSESIHIPINYLEEIDDDVVECSPRSFAQVAANAGSNRRRIAIDFNSENPTLPSENIENQTVPTSVMHSTANITEPIGQNTINLEVSINEAAKNDKKSLETNKEVFEPKIQAVETPKELALNCPLCRNPFVEEMSTMCGHIFCKSCIKNTISRHRKCPTCRKRLTSRGLRRVFLPSSN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3092 203 Pfam Ring finger domain 147 186 IPR001841 -
Psa6g3092 203 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Psa6g3092 203 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Psa6g3092 203 SMART ring_2 148 185 IPR001841 -
Psa6g3092 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 200 IPR013083 -
Psa6g3092 203 SUPERFAMILY RING/U-box 130 191 - -
Psa6g3092 203 PANTHER ELFLESS, ISOFORM B 22 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3092 Psa-Chr6 263335723 263345239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3092 2 202 C3H Transcription Factor Family AT5G48655 33.333 9.72e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3092 K22651 - twl:120000225 132.494