Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3078 ATGGAACAAGAAGAGCACGAAGTGTACGGTGCAGACATTCCTGATGAAGAGGTTGAGATGGAAGCAGACATGGAAGCTGAACAACAAGGAGATGAAGAACTTCCCCCCAATCACACCACAAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTCGAGAAAGAAATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGCATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTACGCATGTACGCCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACGGTCAACAGAGTGACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAATTTGTTGAGATCGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTAAAGGTGTCTGCAAAACGAACAAATGTTCCTGGATTGAAGCAGTACTTTGGAAGAAGACCTGCTGGTTTCCGTGCTAGGAGGCCTTTCATGCCTTCACCATTCTTTCCACCATATGGTTACGGGGTTCCGAGATATAGAAGACCGACGCGATACAGGCCATACTAG 651 0.4562 MEQEEHEVYGADIPDEEVEMEADMEAEQQGDEELPPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSASQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRARRPFMPSPFFPPYGYGVPRYRRPTRYRPY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3078 216 Gene3D - 11 173 IPR012677 -
Psa6g3078 216 MobiDBLite consensus disorder prediction 1 30 - -
Psa6g3078 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Psa6g3078 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Psa6g3078 216 MobiDBLite consensus disorder prediction 57 87 - -
Psa6g3078 216 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 215 - -
Psa6g3078 216 SUPERFAMILY RNA-binding domain, RBD 83 191 IPR035979 GO:0003676
Psa6g3078 216 SMART rrm1_1 94 165 IPR000504 GO:0003723
Psa6g3078 216 CDD RRM_II_PABPs 94 165 - -
Psa6g3078 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 215 - -
Psa6g3078 216 MobiDBLite consensus disorder prediction 1 44 - -
Psa6g3078 216 Coils Coil 43 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3078 Psa-Chr6 261512627 261518132 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3078 94 165 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 5.36e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3078 K14396 - gmx:100527139 322.013