Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3077 ATGTTTTCTCACTTTATGAGTTCTTTGAATTTGAATAATAACCAGCAAAGAAAAGTGACTTTGCTGACCGGAGAATCGTCACATGGAGAAGGACTCTGTGAACCAATTCATGTTCTTCAGAATAATTCTGAGGAAAATGATGATGATGTCATAGAATGTTCGCCAAGAGCTTTTGCTGAGGCAGTGGCCAATGCTAGAAGGAATCGTATGATGAATGAAGTTGACTCAAATAGAGAAAATAATAGGATCTCAAACTTTTTTCAGCCCGATGGTCGCATTATCCAACCAAATGATGAAATTATTTATATAAATTTTGACCCCGTTGCAAATGAGTTAGCTGAAAAAGAGAAGGAAGCTGCAAAAATCAAGAAAAAAGAACTCGAAACTCCAAAAGTGTCTAGCTATAAATGTCCAATATGTATGGATCCTATTCAAGAGGAAATGTCCACAAAGTGTGGCCATATTTTTTGCAAGGTCTGCATAAAACATGCAATAAAAACACAAGGGAAATGTCCTGCATGTAGGAAAGCAGTTACTTTGAGACAACTAATGAGGGTGTTTCTTCCATCTCCCAAATGA 579 0.3679 MFSHFMSSLNLNNNQQRKVTLLTGESSHGEGLCEPIHVLQNNSEENDDDVIECSPRAFAEAVANARRNRMMNEVDSNRENNRISNFFQPDGRIIQPNDEIIYINFDPVANELAEKEKEAAKIKKKELETPKVSSYKCPICMDPIQEEMSTKCGHIFCKVCIKHAIKTQGKCPACRKAVTLRQLMRVFLPSPK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3077 192 Pfam Ring finger domain 136 175 IPR001841 -
Psa6g3077 192 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Psa6g3077 192 ProSiteProfiles Zinc finger RING-type profile. 137 175 IPR001841 -
Psa6g3077 192 PANTHER ELFLESS, ISOFORM B 42 190 - -
Psa6g3077 192 Coils Coil 108 128 - -
Psa6g3077 192 SUPERFAMILY RING/U-box 136 180 - -
Psa6g3077 192 SMART ring_2 137 174 IPR001841 -
Psa6g3077 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3077 Psa-Chr6 261409810 261415627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3077 47 192 C3H Transcription Factor Family AT5G48655 44.000 1.10e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3077 K22651 - cit:102607650 132.109