Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3076 ATGTCAGAAACACAAAAACATTTTGATGTTGCTGAAGATTCTGAAGAATTTCTGTCTTTAAGTTTAGGAAGAGGATCTTCATCCAAATCCCTAAAAAAGAAGGAATATGGATGTAGATTTTGTCACAGAAAATTTCCGAGTTTTCAAGCTTTGGGAGGACACCAGAACGCTCATAAGCGTGAAAAATTGCTTTCAAAAATGGAAAATGATTTTGATAATCTGTGTCCATACTATGTAGAGTCCCCTTTTCATCAAGGAATTGGAAATCCATCATGGCCTCAATTTACAATGATGAACAATGATGGTTGGGTTAATCCAACTCCAATGAATAATAATGTGGGATTTGGAAATTATTATGAAGTTAATAATCATATGCAGATTCCTCCATTTGGTGCTGCTCTTAACAGTGTCTTAATGGAAAATAGCAATCCTTATGTCCCAAATAACCATCAAATTTCATCCTCATTGCCTGATTTGTGCCTTAGACTTTAG 492 0.3476 MSETQKHFDVAEDSEEFLSLSLGRGSSSKSLKKKEYGCRFCHRKFPSFQALGGHQNAHKREKLLSKMENDFDNLCPYYVESPFHQGIGNPSWPQFTMMNNDGWVNPTPMNNNVGFGNYYEVNNHMQIPPFGAALNSVLMENSNPYVPNNHQISSSLPDLCLRL* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3076 163 Pfam C2H2-type zinc finger 36 60 - -
Psa6g3076 163 Gene3D Classic Zinc Finger 11 74 - -
Psa6g3076 163 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Psa6g3076 163 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 27 72 - -
Psa6g3076 163 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 76 155 - -
Psa6g3076 163 SUPERFAMILY beta-beta-alpha zinc fingers 32 63 IPR036236 -
Psa6g3076 163 PANTHER ZINC FINGER PROTEIN JAGGED 27 72 IPR045320 GO:0003700
Psa6g3076 163 PANTHER ZINC FINGER PROTEIN JAGGED 76 155 IPR045320 GO:0003700
Psa6g3076 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3076 Psa-Chr6 261288663 261289617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3076 30 66 C2H2 Transcription Factor Family AT1G66140 62.162 3.20e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3076 - - mtr:MTR_2g067740 128.257