Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3075 ATGGCAGCATCATTTTCAGCAGCATCTTTCTTTACAAGCACAGAAGAGAATCAGAATGAGATGAATCAACAAAATTCATCATCGTCAACAACTCCAACTGCACCACCACCACCTCAGAAGAAAAGAAGAAACCAAGCTGGAACACCATATCCAGATGCAGAAGTGATAGCACTATCTCCAAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAGCTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCAGAACCTTCTTGTGTTCACCATGACCCTTCAAGAGCTCTTGGAGACCTCACTGGAATCAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCCCAAGAAAGTTCAAGACAACCACAATTACCAACCTTAATCACCAACACTTCCATTAACAACTCCCAACTATTTGGAAACTTTAACAACAACAATATATCATTAGCCTTGTCTCAAATTCCTCCACAACAAATCTCATCAACTCATGACCAAAACGACACAAACCAAGCCACTGAAATCTTGCGTTTTGGCAACCACAACATTCTATCCCCACCTCCACAACATGCTCTCCACACCCCTCCATTTAGTTTCATCACTCAACAACCAAACCAAAATTTTCAACATGACCAACATTCTCAAACATTCCAAGGACTAATATCATTGTCTGAACTCAACAATAACAATTTGTTTTCTGAAAACTTCAACCATGAAGCTTCATCATTTTCTTCTGTAGCAACAAAGGCTATTGGTGGTGGTTCTGATGGACTCACTAGAGATTTTCTTGGAGTTGGTCAAATAGTAATGAGAAACATGAATGGAGAAGGAGTTTCACAAAGAGAACAGCGAAACTTCAAGGTGGAAGCAGAGAAAAACGCTGCAAATTTTGGAGGGAACTTTGAGTGA 1152 0.3984 MAASFSAASFFTSTEENQNEMNQQNSSSSTTPTAPPPPQKKRRNQAGTPYPDAEVIALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQLPTLITNTSINNSQLFGNFNNNNISLALSQIPPQQISSTHDQNDTNQATEILRFGNHNILSPPPQHALHTPPFSFITQQPNQNFQHDQHSQTFQGLISLSELNNNNLFSENFNHEASSFSSVATKAIGGGSDGLTRDFLGVGQIVMRNMNGEGVSQREQRNFKVEAEKNAANFGGNFE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3075 383 Gene3D Classic Zinc Finger 123 202 - -
Psa6g3075 383 MobiDBLite consensus disorder prediction 1 30 - -
Psa6g3075 383 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Psa6g3075 383 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 314 - -
Psa6g3075 383 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Psa6g3075 383 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Psa6g3075 383 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 314 - -
Psa6g3075 383 Gene3D Classic Zinc Finger 69 113 - -
Psa6g3075 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Psa6g3075 383 SMART c2h2final6 69 91 IPR013087 -
Psa6g3075 383 SMART c2h2final6 145 165 IPR013087 -
Psa6g3075 383 SMART c2h2final6 110 140 IPR013087 -
Psa6g3075 383 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3075 Psa-Chr6 261061862 261067992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3075 39 204 IDZ Gene Family AT2G02070 89.759 4.40e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g3075 zf-C2H2_jaz 8.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3075 K25870 - gmx:100807789 394.43