Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3072 ATGACAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGTGTTGACCCAGGAACCCATTCACCTACTGGCTTTAACAAACTTCACAACACAAACCTTACAATCAACGAGAATCGCGATGAGGAAGAAGAGGACGACGATGACAACAGAGATGAACCGAGAGAAGGCGCGGTTGATGTTGGAAACCGGAGACCAAGAGGAAGACCACCTGGATCCAAGAACAGACCGAAACCTCCGATATTTGTAACAAGAGATAGTCCTAATGCTTTGAAGAGCCATGTCATGGAGGTTGCTGGTGGAGCCGACATAGCAGAAAGTGTAGCGCAATTTGCAAGGAGGCGTCAACGGGGTGTTTGTGTTCTCAGTGGAAGTGGCTCGGTGGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGGGCTGTTGTAGCACTTCATGGTAGGTTTGAGATCTTGTCCTTAACGGGAACGTTTCTACCTGGTCCTGCTCCGCCAGGTTCAACTGGTCTTACAGTGTACCTGGCTGGAGGACAGGGCCAGGTAGTCGGAGGTTGTGTTGTTGGAGCTCTTGTTGCAGTTGGGCCTGTTATGCTTATTTCCGCTACTTTTACTAACGCGACTTATGAGAGGCTTCCGCTAGAAGATTCTGATAATGATAATGACAATAACAATGAAGGGCCTAGTTCTGCCGCCACCATGCAAGGAGGGTTAGGTGGATCTCCTCCGCCTGGAATCGCTCATCAGTTGCAAGGTGGGATTCCAGATCCATCCTCTATGCCTTTGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCCCTTGCTTGGGCTGCTGCTCATGGAAGGCCACCTTATTAA 885 0.4893 MTVLANPWWTIQGGLSGVDPGTHSPTGFNKLHNTNLTINENRDEEEEDDDDNRDEPREGAVDVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGALVAVGPVMLISATFTNATYERLPLEDSDNDNDNNNEGPSSAATMQGGLGGSPPPGIAHQLQGGIPDPSSMPLYNLPPNLLPNNGGQMGHEALAWAAAHGRPPY* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3072 294 PIRSF ESCAROLA 12 294 IPR014476 GO:0003680
Psa6g3072 294 MobiDBLite consensus disorder prediction 26 90 - -
Psa6g3072 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 294 IPR014476 GO:0003680
Psa6g3072 294 MobiDBLite consensus disorder prediction 41 55 - -
Psa6g3072 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 206 IPR005175 -
Psa6g3072 294 PANTHER DNA-BINDING PROTEIN-LIKE 25 294 - -
Psa6g3072 294 ProSiteProfiles PPC domain profile profile. 90 230 IPR005175 -
Psa6g3072 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Psa6g3072 294 Gene3D - 94 222 - -
Psa6g3072 294 CDD DUF296 94 177 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3072 Psa-Chr6 260871548 260872587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3072 4 294 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.259 1.04e-100 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3072 - - var:108341460 360.147