Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3071 ATGGTAAAAGCAATAGTGTCTGTGCTGTTGATTACCTCTATCGTCTTGTGTGTATCTGCATCGGATAATGGGTTTCCGAGATGTAATTGCGACGATGAAGCGAGTTTGTGGACTATTGAGAGCATTTTGGAGTGTCAAAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCAATCCCTATTGAACTGCTTTATTTTGTCAGTTGCTCCAACGTCCCTTTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATCGTACTATGTGGATTGACACATTTGTTGAATGGTTGGACTTATGGTCCTCACACTTTTCAGCTTATGGTGGCACTTACTATCTTTAAGATTCTCACTGCGTTGGTGTCTTGTGCTACTGCGATAACGCTTGTTACTTTGATTCCTTTGCTTCTTAAAGTGAAGGTTAGAGAATTCATGCTCAAGAAAAAGACGTGGGATCTTGGACGGGAGGTTGGTCTTATTATGAAGCAAAAGGAGGCGGCGGTGCATGTAAGAATGCTTACTCAAGAGATTCGTAAGTCGCTTGATAGACATACGATTCTGTATACCACTTTGGTGGAGCTTTCTAAAACGCTAGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGAAGAAAAGACAGTGATGAATCTCACTCATGAATTGAACGGAAGGAATTTAAATATTTCTATACCGATTACTGATGTAGATGTTGTGAGAATTAAGGGAAGCAGTGTAGTGAAAATACTTGGCTCTGACTCGGCGCTTGCTGTTTCCAGTTGCGTGGTTTCTGGTGATGCAGGACCGGTTGCTGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAAAGGAGGAACACCTGAGCTAACTCAGGCGTGTTATGCAATATTGGTCTTGATTCTTCCCGCCGGAGAGCCTAGATCTTGGAGCAACCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAAGTTGCTGTAGCTCTATCCCATGCTGCAATTCTTGAAGAGTCTCAACTTATGAGAGAGAAGTTGGAGGAACGCAATCGAGCTTTGCAACAGGCGAGAAGGAACGCTATGATGGCAAGCCAGGCAAGAAACTCGTTTCAGAAAGTCATGAGCGATGGCATGAGGAGGCCTATGCACTCGATTTTGGGATTGCTTTCAATGGTACAAGACGATAATTTAAAGAACGAACAGAAACTTATTGTGGATGCAATGCTGAGGACGAGCAATGTGCTATCAAACTTGATAAACGATGCCATGGACAGCTCAGCAAAAGATGATGGAAGGTTCCCTTTGGAGATAAGGTCTTTCGGGTTACATTCCATGATAAAAGAAGCAGCTTGCCTTGCCAAATGCATGTGTGTTTATAAGGGCTTGGGTTTTATCGTTGAGGTTGATAAGTCTTTACCGAACAATGTTATGGGTGATGAGAGGAGAGTTTTTCAGGTGATTTTGCATATGGTTGGGAATCTACTTGATTGCAACCATGGAGAAGGAGGGATCCTTGTATTCCGGGTTTCGGCAGATGCTGGAAGTCAAGGGAGGAATGAGAAAGGATGGACTACCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCACCGGTAGCGATTCTGAAGTTGGGAGCTCAGTTTCCTCGGGACCCGGTGGTAGGACATATACCAGTGATAGGTATGAGGGCAGATTGAGCTTTAGTATTTGCAAGAGGATAGTCCAGTTGATGCAAGGGAACTTATGGTTGGTACCATACACTCATGGCATTCCTCAAAGCATGACACTTCTTCTCCGCTTTCAACTACGACCTTCCATTGCAATAGCCATCTCTGAACCCGGAGAATCATCAGAACGCACGTATTCCAATTCAATGCTAAGAGGTCTGCAAGTTCTGTTAGTTGACCATGACGATGTAAATAGAGCAGTCACACAAAAACTGCTTCAGAAACTCGGCTGCTCCGTCACTTCCGCCTCTTCAGGATTCGAATGCCTCACTCTCATCGGACCTGTCGGATCTTCCATCCAAGTCATTCTCTTGGATCTCCAAACACCTGACATAGACGGCTTCGAAGTTGCCGCGAGGATCCGGAAGTTCAAAAGTGGAAACAGGCCTATGATTATCGCGTTAACAGCAAGCGCAGAAGAAGATTTGTGGGAAAGGTGTATGCAGATTGGCGTCAATGGAGTAATCCGAAAACCGGTTTTGTTGCAAGGAATCGCCAGTGAACTCAGAAGAATTCTGATGCAGGGAAATATATAA 2277 0.4427 MVKAIVSVLLITSIVLCVSASDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTIFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGLIMKQKEAAVHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNEEKTVMNLTHELNGRNLNISIPITDVDVVRIKGSSVVKILGSDSALAVSSCVVSGDAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPAGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQQARRNAMMASQARNSFQKVMSDGMRRPMHSILGLLSMVQDDNLKNEQKLIVDAMLRTSNVLSNLINDAMDSSAKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYKGLGFIVEVDKSLPNNVMGDERRVFQVILHMVGNLLDCNHGEGGILVFRVSADAGSQGRNEKGWTTWRPSSSSGDVNIRFEIGITGSDSEVGSSVSSGPGGRTYTSDRYEGRLSFSICKRIVQLMQGNLWLVPYTHGIPQSMTLLLRFQLRPSIAIAISEPGESSERTYSNSMLRGLQVLLVDHDDVNRAVTQKLLQKLGCSVTSASSGFECLTLIGPVGSSIQVILLDLQTPDIDGFEVAARIRKFKSGNRPMIIALTASAEEDLWERCMQIGVNGVIRKPVLLQGIASELRRILMQGNI* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3071 758 Coils Coil 334 361 - -
Psa6g3071 758 Pfam Response regulator receiver domain 636 743 IPR001789 GO:0000160
Psa6g3071 758 PANTHER ETHYLENE RESPONSE SENSOR 2 11 757 - -
Psa6g3071 758 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Psa6g3071 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 591 IPR036890 -
Psa6g3071 758 SMART gaf_1 182 338 IPR003018 GO:0005515
Psa6g3071 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Psa6g3071 758 Pfam GAF domain 182 328 IPR003018 GO:0005515
Psa6g3071 758 Gene3D - 634 757 - -
Psa6g3071 758 SMART REC_2 634 753 IPR001789 GO:0000160
Psa6g3071 758 Gene3D - 162 329 IPR029016 -
Psa6g3071 758 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 592 IPR003594 -
Psa6g3071 758 Gene3D - 330 427 - -
Psa6g3071 758 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Psa6g3071 758 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Psa6g3071 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Psa6g3071 758 CDD REC_ETR-like 634 749 - -
Psa6g3071 758 SUPERFAMILY GAF domain-like 185 331 - -
Psa6g3071 758 SUPERFAMILY CheY-like 631 753 IPR011006 -
Psa6g3071 758 Pfam His Kinase A (phospho-acceptor) domain 365 428 IPR003661 GO:0000155|GO:0007165
Psa6g3071 758 Gene3D - 428 606 IPR036890 -
Psa6g3071 758 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Psa6g3071 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3071 Psa-Chr6 260750313 260755157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3071 20 753 Miscellaneous Gene Families AT3G04580 58.155 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g3071 HATPase_c 1.8e-06 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3071 K14509 - gmx:100787425 1281.93