Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3058 ATGAGTAACCGACGAAGAAAGACGAACTTGTTATTAGGTCAAGACAACATTACATCTGAAGAGTCTTCAATGGGTGAAGGGTCCTCTGAGTCTATTCATGTTCCCATAAATTATCTCGAGGAAATTGATGACGATGTTGTTGAATGTTCACCTCGAGCTTTTGCCCAGGCGGCCGCAAATGCAGGGAGAACTCGTAGAAGGATTGCAATCGACTGGAATTTGGAGGACATCATTCAAATTCCAATTTTGCCACCAGAGAACATCCACATCCAGAATCCAATTCCAATTATCTCCACATCTGTTATGCAGTATAGAGAGGACATAACTGAGCCAATTGGTCAAAATAATGCAAATTTGGAAGTCAATATCAATGAAGCTGCTGAAAATGACAAGAAGTCATCAGAAACTAACAGGGAAGTGCCTGAGCCAAATGTTGAAGCTGTTGAACCTCCAAAAGAGGCTGAACCTCCAAAAGATCCTCTCTTAAACTGCCCAATATGTCTGGAAGCTTTTGTTGAGGAAACGTCAACAATGTGTGGCCATATTTTTTGCCAGAGTTGCATTAAAACAGCAATAACAAGGCAAAGAAAATGTCCTACATGTAGAAGAAAGCATAGTTGTAGAGGGCTAAGAAGGGTGTTTCTTCCATCTTATAGTTGA 660 0.4076 MSNRRRKTNLLLGQDNITSEESSMGEGSSESIHVPINYLEEIDDDVVECSPRAFAQAAANAGRTRRRIAIDWNLEDIIQIPILPPENIHIQNPIPIISTSVMQYREDITEPIGQNNANLEVNINEAAENDKKSSETNREVPEPNVEAVEPPKEAEPPKDPLLNCPICLEAFVEETSTMCGHIFCQSCIKTAITRQRKCPTCRRKHSCRGLRRVFLPSYS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3058 219 SUPERFAMILY RING/U-box 163 205 - -
Psa6g3058 219 Pfam Ring finger domain 163 202 IPR001841 -
Psa6g3058 219 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Psa6g3058 219 MobiDBLite consensus disorder prediction 1 30 - -
Psa6g3058 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 215 IPR013083 -
Psa6g3058 219 SMART ring_2 164 201 IPR001841 -
Psa6g3058 219 MobiDBLite consensus disorder prediction 127 156 - -
Psa6g3058 219 PANTHER ELFLESS, ISOFORM B 21 217 - -
Psa6g3058 219 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3058 Psa-Chr6 259704621 259712763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3058 3 217 C3H Transcription Factor Family AT5G48655 32.889 2.32e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3058 K22651 - gmx:100306616 114.775