Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3057 ATGATTAATCGACGAAGAAAAGCGAACTTATTAGATCTGAACAACATTACATCTGAAGAGTCTTTATTGGATGAAGAGCCATCTGAGTCTATTCATGTTCCCATAAATTATCTCGAGGAAATTGATGATGATGTTGTTGAATGTTCGCCTCGAGCTTTTGCCCAGGCGGTGGCCAATTTAGGGAGATCTCGTAGAAGGATTGCAATTGACTTGAATTTGGAATATCAACTGATGCCAACACCTGTTATCCATTATGGAGAGAACATAGAAATTCCAACTCTGCCATCAGAGAACATCGAGAATCCAACTATCCCAACATCAGTTATGCAGTATACACAGGACATAACTGAACCAATTGATCAAAATAACATCAATGAAGCTACTAAAAATGACAAGAAGTCATCAGAAACTAACAAGGAAATGTCTGAGCCTACTATTCAAGCTGTTGAACCTCCAAAAGAGGCTGAACCTCCAAAAGATCCTCCCTTAAACTGCCCAATATGTATGGAAGCTTTTGTTGAGGAAATGTCAACTGTGTGTGGCCATATTTTTTGCAAGATTTGCATTAAAACAGCAATATCAAGACAAAAAAAATGTCCTACATGTAGAAAAAAGCTTACTTGTAGAGGGCTAAGAAGGGTGTTTCTTCCATCTTCCAGTTGA 663 0.3816 MINRRRKANLLDLNNITSEESLLDEEPSESIHVPINYLEEIDDDVVECSPRAFAQAVANLGRSRRRIAIDLNLEYQLMPTPVIHYGENIEIPTLPSENIENPTIPTSVMQYTQDITEPIDQNNINEATKNDKKSSETNKEMSEPTIQAVEPPKEAEPPKDPPLNCPICMEAFVEEMSTVCGHIFCKICIKTAISRQKKCPTCRKKLTCRGLRRVFLPSSS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3057 220 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
Psa6g3057 220 SUPERFAMILY RING/U-box 164 208 - -
Psa6g3057 220 MobiDBLite consensus disorder prediction 122 159 - -
Psa6g3057 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 216 IPR013083 -
Psa6g3057 220 Pfam Zinc finger, C3HC4 type (RING finger) 164 202 - -
Psa6g3057 220 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Psa6g3057 220 PANTHER ELFLESS, ISOFORM B 23 219 - -
Psa6g3057 220 SMART ring_2 165 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3057 Psa-Chr6 259647634 259649595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3057 3 219 C3H Transcription Factor Family AT5G48655 34.483 3.07e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3057 K22651 - gmx:100306616 129.413