Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3056 ATGTCAGAATCAAACGCCATAGCAAATGGTTTAGCTGGTGCTGGTGGTGGAATCATTGCTCAAATCATAACTTATCCACTTCAAGCTGTAAATACACGCCAACAAACTGAGAGAACGTTACTCAAGAAGAATAAGCAAAGTTTGGTTCCTCAATCTTCCAATGGAATAGCCACTGCTTCTTCTTCTGGATTTTTTCTTCAACTCTTTCAGGTTATTGGAAATGAAGGTTGGGGTGGACTGTATAGTGGCCTCAAACCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGAATTTACTATTTCTTCTATCAAATATTCAAGAACAAAGCTGTGGCTATTGCAGCTGCAAGGAAAGTTAAAGGGCGTGGAGATGGTACTGTTGGAGTGTTTGGTTGGCTCATTGTGGCTGCTATTGCTGGATCCTTGAATGTTTTGTTCACAAACCCAATATGGGTTCTAGTGACGCGTATGCAGACACATACTCAAGCAGAAAGAAAAATCATGGACGAAAAGAAAGAAGCTATAAGAAAGGCTGCTTCTGAAAGTAGCTTAGCAGGTTCGACATTGGAAAACAAATTAGCAGAACTGAATTCTACAAAACCTCGACCATTTGGAACTGTACATGCAGCTAATGAAGTATATAACGAAGCCGGTATAGTTGGATTTTGGAAGGGTGTCATCCCTGCTCTAATTATGGTGTGCAATCCGTCTATCCAGTTTATGATTTATGAGAGTTCATTGAAGCATCTAAGGGAGAAACGTTCTGCTAAGAAGCAGGGGGATACAACTGTAACCGCATTGGAGGTCTTTTTGGTGGGAGCAATAGCGAAACTTGGAGCTACTGTCTCAACATACCCGTTGCAAGTTGTCAAGTCAAGGCTTCAAGCAAAGCAGGAGATTGGTGGAAATAACTCATTAAGATACTCAGGTACATTTGATGCAATTCTTAAAATGATCCGTTACGAAGGCTTGCCAGGTTTTTATAAGGGAATGAGTACAAAGATAGTACAAAGTGTTTTTGCTGCTTCTGTATTGTTCATGATAAAGGAGGAACTTGTTAAGGCTATCATGGTTCTGGCAAATAAGAGAAAAAAAGTTGTATTAAAATATGAGTAG 1113 0.4016 MSESNAIANGLAGAGGGIIAQIITYPLQAVNTRQQTERTLLKKNKQSLVPQSSNGIATASSSGFFLQLFQVIGNEGWGGLYSGLKPSLLGTAASQGIYYFFYQIFKNKAVAIAAARKVKGRGDGTVGVFGWLIVAAIAGSLNVLFTNPIWVLVTRMQTHTQAERKIMDEKKEAIRKAASESSLAGSTLENKLAELNSTKPRPFGTVHAANEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLKHLREKRSAKKQGDTTVTALEVFLVGAIAKLGATVSTYPLQVVKSRLQAKQEIGGNNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMIKEELVKAIMVLANKRKKVVLKYE* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3056 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 263 354 IPR018108 -
Psa6g3056 370 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 4 363 IPR044712 GO:0006862|GO:0055085
Psa6g3056 370 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 4 363 - -
Psa6g3056 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 108 IPR018108 -
Psa6g3056 370 Gene3D Mitochondrial carrier domain 11 368 IPR023395 -
Psa6g3056 370 Pfam Mitochondrial carrier protein 4 107 IPR018108 -
Psa6g3056 370 Pfam Mitochondrial carrier protein 126 251 IPR018108 -
Psa6g3056 370 Pfam Mitochondrial carrier protein 263 355 IPR018108 -
Psa6g3056 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 248 IPR018108 -
Psa6g3056 370 SUPERFAMILY Mitochondrial carrier 5 350 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3056 Psa-Chr6 259629193 259634765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3056 55 353 Chloroplast and Mitochondria Gene Families AT1G25380 27.273 1.16e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3056 K13354 - gmx:100777898 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3056 6 259629193 259634765 Psa6g3056 6 259629193 259634765 ECH