Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3045 ATGGCTAGTTGTGGAAGAGAAGGTGTAGTGAGACAATATGTAAGATCAAAAGTTCCTCGTTTAAGATGGACACCAGAACTTCATCGTTGTTTTGTTTATGCCATTGAAACTCTTGGTGGTCATCAAAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTTACAATTTCACATGTCAAAAGCCATTTGCAGATGTATAGGAGCATGAGAAGTGACTCATGTAACAACCAAGATAGGACTATATCCGTACATAAAAGACAATCTTTTCAAGAGAATGATGATGGATCTATTGGAAAGGAATCTGATTCTCTCTTTACCTACACAAATTTCTCCCCAAAAAGAGCTAGAATCGAGAAGAAAAGTTCATTCTCAGGAATCTTAGAATGCAGGGAAAGTTTATGTGAAGCAGTTCCCAATCCATACACAAGATTCTATGATTATGTGCAGGACATGGTTCAGGAGCAGCAGAAAGGAATAAAGAACATTTGTGTTGATGGTTCAATATGGAAGATCACTCCTGAACCACAATATTGCACAATGCTACCAAAACAAGAAACTCATTTGCTCAAGGGAACAAAGTTAAATGAAAAAAAGAATGTGAATGAAAAGAGTGTACGTGCAAAAGAAGAAGAAGATATAGGAGGTTGTGAATTGTCATTATCAATTTCATTGCCTCAAAAAAATAATGATGTTAGAGACTCTGGATTTAGTAACTATATGGGTTGTTCTACTGTCCAAAACAGAATTAATTTGGATCTATCTTTGGCTATTTGA 786 0.3613 MASCGREGVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRSDSCNNQDRTISVHKRQSFQENDDGSIGKESDSLFTYTNFSPKRARIEKKSSFSGILECRESLCEAVPNPYTRFYDYVQDMVQEQQKGIKNICVDGSIWKITPEPQYCTMLPKQETHLLKGTKLNEKKNVNEKSVRAKEEEDIGGCELSLSISLPQKNNDVRDSGFSNYMGCSTVQNRINLDLSLAI* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3045 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Psa6g3045 261 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 2 167 - -
Psa6g3045 261 Gene3D - 18 75 - -
Psa6g3045 261 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Psa6g3045 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Psa6g3045 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 167 IPR044848 GO:0003700
Psa6g3045 261 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3045 Psa-Chr6 257464753 257467377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3045 1 74 G2-like Transcription Factor Family AT1G14600 72.152 1.91e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa6g3045 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3045 - - gmx:100796564 313.923