Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3037 ATGGCTGAACAAACTGAGAAGGCTTATCTCAAACAACCCAAAGTGTTTTATGTATATTCAGCACTTCATATCTCAATGTGTGGTTTGTTTTTAACTGTGATGATTGTTGATCCATATTTGTTTGTTGTTTTTGCTCAATTTCGTAGCTCGAAGAAATCTGTAAGGGGAAGAGGCCCGGTAAAGGTGGAAATCGCTTCTGGAAAATGTTGGTCTTGGATTCAAGACCCCCAAAGAAGCCATCGAAGGTATGAGAAGAGGCATTCCAACATTCCAGCTCATGTGTCACCTGCCTTCCGTGTTAAGGAAGGTGATCATGTCATTATTGGTCAATGCAGGCCACTCTCCAAGACAGTGAGGTTCAATGTATTGAAATCATCCAGCTGGATCATCCAGTGGTGCAAAGAAGGCATTTTCTGGCATATGAGATTTGGTTGGCACTCTTAG 444 0.4212 MAEQTEKAYLKQPKVFYVYSALHISMCGLFLTVMIVDPYLFVVFAQFRSSKKSVRGRGPVKVEIASGKCWSWIQDPQRSHRRYEKRHSNIPAHVSPAFRVKEGDHVIIGQCRPLSKTVRFNVLKSSSWIIQWCKEGIFWHMRFGWHS* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3037 147 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 80 124 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa6g3037 147 Pfam Ribosomal protein S17 80 124 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa6g3037 147 Gene3D - 74 131 - -
Psa6g3037 147 PRINTS Ribosomal protein S17 family signature 70 93 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa6g3037 147 PRINTS Ribosomal protein S17 family signature 103 113 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa6g3037 147 PRINTS Ribosomal protein S17 family signature 113 120 IPR000266 GO:0003735|GO:0005840|GO:0006412
Psa6g3037 147 ProSitePatterns Ribosomal protein S17 signature. 103 115 IPR019979 GO:0003735|GO:0005840|GO:0006412
Psa6g3037 147 PANTHER BNAA06G38660D PROTEIN 80 124 - -
Psa6g3037 147 SUPERFAMILY Nucleic acid-binding proteins 80 125 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3037 Psa-Chr6 256818803 256820299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3037 1 124 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 45.890 2.30e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3037 K02949 - sind:105170169 103.605