Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3036 ATGATGGAACACCTAGCCTCAATATTCAACACAGAGAAAGACAGAGTTAACTGTCCATTCTACTTCAAGATCGGTGCATGTAGACACGATGACCGTTGTCCGCGTCTCCATATCCGTCCAACCATTTCGCCAACTCTTCTTCTCTCCAACATGTACCAACATCCCGATATCATCACTCCCGACATCAATCCCAACGATCAACCTATTGATCCGCGTCAGATCCAGCAACACTTCGAAGATTTCTACAAATATATCTTTCTAGAGATTTCTAAGTTTGGTTACATCGAACCCCTAAAAGTTTTTGATAATCTCGTTGATCATATGATCAATAATGTTTATGTTCTGTTTCGTGAGGAGGATCATGCTGCGGTTGCGCTTGCGTCGTTGCACGGTAGATTCTACTCTAGTCGTCCTATTCTTGCTGATTTTTCTCTGGTGATGGGTTTTCGTGAGGCTACTTGTCGGTAA 468 0.4295 MMEHLASIFNTEKDRVNCPFYFKIGACRHDDRCPRLHIRPTISPTLLLSNMYQHPDIITPDINPNDQPIDPRQIQQHFEDFYKYIFLEISKFGYIEPLKVFDNLVDHMINNVYVLFREEDHAAVALASLHGRFYSSRPILADFSLVMGFREATCR* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3036 155 Gene3D - 43 144 IPR012677 -
Psa6g3036 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Psa6g3036 155 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 1 155 - -
Psa6g3036 155 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 155 IPR009145 GO:0000398|GO:0003723|GO:0089701
Psa6g3036 155 SUPERFAMILY RNA-binding domain, RBD 77 143 IPR035979 GO:0003676
Psa6g3036 155 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Psa6g3036 155 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Psa6g3036 155 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Psa6g3036 155 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Psa6g3036 155 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Psa6g3036 155 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Psa6g3036 155 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3036 Psa-Chr6 256654264 256654731 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g3036 zf-CCCH 2.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3036 K12836 - gmx:100799606 234.572