Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3023 ATGGAAAAGGTAGCTCCTCCTCTTCTTCCTCTTCCTCATCCATTTTACGATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACATACCAAACGACAACTGGAACCCTAAAGAATGGAATTGGGACAGTGTTCGATTCATGGCCAAATCCACCGTCTCTCAACAACAACAACCGGAAGAAACTCTCAAATTGAATCTCGCCGGTGGTGGTTTTTCCGGCGGGGGCGTTACAAATAGAGCTAACAAAAGAGTACGTTCAGGATCTCCATCTGGAACGGCGTCGTATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTGTCAAAAGCGAAGGATTATCATCGGAGACATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAAGCTTTGCTTGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTGTTGGAGTTTGACGAAGGGAAACGAAGCTGCCGTCGGAGACTTGCTGGACATAATCGTCGCCGGAGAAAGACGCAGCCGGATGAGGTGGCTTCTCCTCCGTTGAATCAGCATGTTGCGGCTGCTGCTAATTTGGAAATCTTTAATTTGTTGACTGCTATTGCTGATGGTTCGCAAGGAAAATCTGAAGAAAGAAGGTCACAAATTCCAGATAAAGAGCATCTTGCACAGATTCTGAATAGGATTCCTTTACCTGCTAATCTTACAGCAAAGTTGCTGGATGTTGGCAATAACTTGAATGGGAAAAATGGTAATGTGCAAATGCAAACTTCATCATTCTATCATCATCGTGATGGTCAACCTAACAACGGTCAACCTAACAACGTCCCCTTGGCCCCATTAACGATGGACTTTCTTGGCGTTCTTTCCACCACTCCATCGACACCTGTTCAAAATGCCATTTCATTACACTCTCAAAATGGTGGCAACAAATCCACAACTAGTGCTGATCATATTAGAGAACAACAGTTCACTTCAGTTGCTGGAGAAAGAAGTAGTGGCAGTTCCCAGTCTCCAAATGACGATTCAGATTGCCAGGAGGATGTTCGAGTGAATTTGCCACTGCAACTTTTTAGCTCCTCTCCAGAAGATGACTTCCGATCAAAATTGCCATCTTCGCGGAAGTATTTCTCATCAGAAAGTAGTAACCCTGTGGACGAGAGGTCGCCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAAAGTGGGATTAGAGGCGTCAATCCTAATAGCAATTCAACTGGAATAGGAGTCGATGCAAATAAGGAAACCAGCCAAAGTCATAGTTGTACTACTATCCCTTTTGATCTCTTTAAAGGGTCAAAATCAAATAACATTATCCAACAAGCTAGTTCAGTTCAAAGTGTTCCATTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGACCGTACTGGGAGAATAATGTTTAAATTATTTGACAAGCACCCTAGCCATTTCCCAGGAACATTGCGCACACAGATTTACAATTGGCTTTCTACCCGACCATCAGACTTGGAGAGTTACATAAGGCCTGGCTGCGTCGTTCTATCAATTTATGCCACAATGTCTTCTGCTGCCTGGGCGCAACTAGAAGAAAACTTCCTCCAACGTGTTCATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCGTACAAAGACGGAAAGATACGCATGTGCAAACCATGGGGAACATGGAGGTCTCCAGAGTTGACGTCAGTGTCCCCTTTGGCGATTGTTAGTGGACAAGAAACCTCTATGTCATTGAAGGGAAGAAACCTGTCTGCTTCTGGCACAAAGATTCATTGCACTGGTGCTGACTGTTACACGTCATCAGAAGTTATAGGTTCTGTAGATCCTGGTATGGTCTATGATGAGATAAAATTGAATGGTTTTAAAGTTCAGAATGCATCTCCTGGTGTTCTAGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGCAACTGTTTTCCAGTGATAATAGCTGATGCATCCATTTGCAAGGAATTGAGACCGCTTGAGTCTGAATTTGATGAGGAGGAAAAAATATGTGATGCCATTTCGGAGGAGCACGAATATCATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTCTGAATGAGCTTGGCTGGCTGTTTCAAAGGGAAAGGTTGTCGAGTGTGCACGAGGTTCCAGAGTATACACTCGACAGGTTCAAATTTGTACTGACATTTTCTGTGGAGAGAAATTGTTGCATGATAGTCAAAACCCTTTTGGATATGTTGGTTGATAAACACTTAGAAGGAGAAAGGTTGTCAACAGGGTCAATGGAGATGCTTAAAACAATCCAACTCCTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATTTACTTGTCCATTATTCTATACCTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCAAATCTTGAGGGACCTGGTGGTATTACTCCCTTGCATTTGGCAGCATCTACATTGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAAGAGATTGGACTGAAGTGCTGGGAGACCCTTGTGGATGAAAATGGGCAGACTCCACATGCATACGCCGCGATGAGAAATAATCAGTCTTACAATATGTTGGTTGCGCGGAAACTTTCTGATAGACAAAAAACAAGTGAAGTTGCAGTTACAATTGACAATGAGATAGAGCACCAATCACTGGGAATTGAGCTTATGCAAAAGCAAATTAACCAACTCAAACGGGTTGGAAACTCTTGTTCCAAGTGTGCAATTGCCGATGTTCGCTTCAAGAGAAGATTTTCAGGTTCACGGAACTGGCTTCATGGTCCCTTTATTCATTCAATGCTAGCTGTTGCTGCTGTTTGTGTTTGTGTTTGCGTGTTATTCCGCGGAACCCCTTTTGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGGATTTCGGCACAATTTAA 3075 0.4257 MEKVAPPLLPLPHPFYDSSNNKKRDLSYDVVHIPNDNWNPKEWNWDSVRFMAKSTVSQQQQPEETLKLNLAGGGFSGGGVTNRANKRVRSGSPSGTASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVASPPLNQHVAAAANLEIFNLLTAIADGSQGKSEERRSQIPDKEHLAQILNRIPLPANLTAKLLDVGNNLNGKNGNVQMQTSSFYHHRDGQPNNGQPNNVPLAPLTMDFLGVLSTTPSTPVQNAISLHSQNGGNKSTTSADHIREQQFTSVAGERSSGSSQSPNDDSDCQEDVRVNLPLQLFSSSPEDDFRSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQSGIRGVNPNSNSTGIGVDANKETSQSHSCTTIPFDLFKGSKSNNIIQQASSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSAAWAQLEENFLQRVHSLIHNSDSDFWRNGRFLVYSGSQLASYKDGKIRMCKPWGTWRSPELTSVSPLAIVSGQETSMSLKGRNLSASGTKIHCTGADCYTSSEVIGSVDPGMVYDEIKLNGFKVQNASPGVLGRCFIEVENGFKGNCFPVIIADASICKELRPLESEFDEEEKICDAISEEHEYHFGRPKSRDEALHFLNELGWLFQRERLSSVHEVPEYTLDRFKFVLTFSVERNCCMIVKTLLDMLVDKHLEGERLSTGSMEMLKTIQLLNRAVKRKYISMVDLLVHYSIPSKNDTSKKYVFPPNLEGPGGITPLHLAASTLDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYAAMRNNQSYNMLVARKLSDRQKTSEVAVTIDNEIEHQSLGIELMQKQINQLKRVGNSCSKCAIADVRFKRRFSGSRNWLHGPFIHSMLAVAAVCVCVCVLFRGTPFVGSVSPFRWENLDFGTI* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3023 1024 ProSiteProfiles Zinc finger SBP-type profile. 99 176 IPR004333 GO:0003677
Psa6g3023 1024 MobiDBLite consensus disorder prediction 329 399 - -
Psa6g3023 1024 SUPERFAMILY Ankyrin repeat 770 910 IPR036770 -
Psa6g3023 1024 MobiDBLite consensus disorder prediction 166 186 - -
Psa6g3023 1024 SUPERFAMILY SBT domain 100 181 IPR036893 GO:0003677|GO:0005634
Psa6g3023 1024 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 27 1024 - -
Psa6g3023 1024 Gene3D - 93 163 IPR036893 GO:0003677|GO:0005634
Psa6g3023 1024 MobiDBLite consensus disorder prediction 329 346 - -
Psa6g3023 1024 MobiDBLite consensus disorder prediction 357 399 - -
Psa6g3023 1024 Pfam SBP domain 102 175 IPR004333 GO:0003677
Psa6g3023 1024 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 1024 IPR044817 GO:0003677
Psa6g3023 1024 Gene3D - 767 955 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3023 Psa-Chr6 255203136 255209166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3023 3 1024 SBP-box Gene Family AT1G20980 50.186 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa6g3023 SBP 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3023 - - gmx:100819004 1398.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3023 6 255203136 255209166 Psa6g3023 6 255203136 255209166 ECH