Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3018 ATGAAACCCGAACTCTACGAAATCTCCGACGACGAATGGGAGAATCACTCTTTCAAACCCTCTCGTGTCCTCAAACGACCTCGCTCTCCACCACCGCCTCTCGACTCCTTCGCTTATAAACCTCCTTCTCAAACCCTTTCCTCATCCGACGAAGACGATTGCGTCGAAATCAATCGAAACACCGCTAATACCTCTGAATGCCTCGATGATTTGGAGGACGCTGATGTGGATGACAGTAAAGTAGCTCCCGCGGCGGCGACGACGACTCGTCGGAGGTTTATCATCGATGATGATGAGGATGAGTTTGGCGGAGGGGATGGGAATGGAGATGCTGTTGATTTATTTGAGATTGATTCGACGGAGGATGAGGTTGAAGAAGAGAACGAAGATGATTTGGTTGGTAGGGCTTTGCAAAAGTGCGCTAGGATTTCGGTTGAGTTGAAAGGTGAGCTGTTTGGTTCTTCTGGAGTTGCTTGTGATAGGTATTCGGAGGTGGAATCTTGTTCAGTCAGAATTGTTACTCAGGATGATATTGATGTTGCGTGTGGGTCTGAGGATTCGGATTTTCAACCTCTGTTAAAGCCGTATCAACTGGTTGGTGTCAATTTCTTGCTTTTGCTGTATCGGAAGGGTATTGCAGGAGCCATATTGGCAGATGAAATGGGGCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCATCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGATGGTGCCCATCCATTTCTGTTCTTCAATATCACGGGGCTGCACGCACAGCATACTGCAAGGAGTTAAACTCCTTATCCAAGGCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTCGAACGGCACAGTCCACAGCAGAAGGATGATCGTAAAATTTTGAAGCGTTGGAAGTGGAGCTGTGTACTGATGGATGAGGCACATGCTTTAAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCAAACCAACGCTTGATGCTGACAGGGACACCTCTTCAAAATGACCTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTACTAAGTGCTGAAGATACAGATTTAATAAGTCGTATGAAGTCTATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTAATGCAGCAACTTGTTCAAAAAACACAGAAGGTTGAATATGTCATGATGGTAAAGCAACAGGAACATGCATATAGGGAAGCCATTGAGGAGTATCGGACTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCAAAAAATGTTCTTGAACTTCTTCCTCGACGACAAATAAATAATTACTTTGTTCAGTTTCGCAAGATTGCCAACCATCCTTTGTTGATAAGGCGAATTTATACTGACGAGGATGTAGATCGCTTTGCTAGGAAGCTACATCCATTGGGTGCTTTTGGCTTTGAATGTACTATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTTCATTATCGTATCAATGATAGAAAGGGGATTCTTTCAGATAAGTACGTTATGCTTTCTGCAAAATGTCGGGCTCTAGCAGAACTTCTTCCATCACTAAAGAAGAGTGGCCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATGTATTGGAGTGGGCTTTGGATGTTATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACAATAGTTGACACATTCAATAATGATACTTCGATTTTTGCATGCTTACTTTCCACAAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATAGACTGGTGACAAAGGGAACGGTTGACGAGAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCATGGAAGATATCAAAGAAGGGGACATGCCTGAGAAGACAATGGGGGAGATATTGTCTGCAATTTTGTTAAAATATTGA 2232 0.4238 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLDSFAYKPPSQTLSSSDEDDCVEINRNTANTSECLDDLEDADVDDSKVAPAAATTTRRRFIIDDDEDEFGGGDGNGDAVDLFEIDSTEDEVEEENEDDLVGRALQKCARISVELKGELFGSSGVACDRYSEVESCSVRIVTQDDIDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKRWCPSISVLQYHGAARTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDTDLISRMKSILGPFILRRLKSDVMQQLVQKTQKVEYVMMVKQQEHAYREAIEEYRTVSQARLTKCSDLNSKNVLELLPRRQINNYFVQFRKIANHPLLIRRIYTDEDVDRFARKLHPLGAFGFECTMDRVIEELKSYNDFSIHRLLLHYRINDRKGILSDKYVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDVLEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEDIKEGDMPEKTMGEILSAILLKY* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3018 743 CDD SF2_C_SNF 559 692 - -
Psa6g3018 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 384 IPR014001 -
Psa6g3018 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 723 IPR027417 -
Psa6g3018 743 Pfam Helicase conserved C-terminal domain 569 681 IPR001650 -
Psa6g3018 743 Pfam SNF2-related domain 212 499 IPR000330 GO:0005524|GO:0140658
Psa6g3018 743 Gene3D - 549 737 IPR027417 -
Psa6g3018 743 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g3018 743 PANTHER SNF2/RAD54 HELICASE FAMILY 55 740 - -
Psa6g3018 743 MobiDBLite consensus disorder prediction 1 64 - -
Psa6g3018 743 SMART ultradead3 189 394 IPR014001 -
Psa6g3018 743 Gene3D - 179 445 IPR038718 -
Psa6g3018 743 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 55 740 - -
Psa6g3018 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 419 IPR027417 -
Psa6g3018 743 CDD DEXHc_Snf 193 386 - -
Psa6g3018 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 723 IPR001650 -
Psa6g3018 743 SMART helicmild6 598 681 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3018 Psa-Chr6 253791896 253805015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3018 214 720 RAD5 or RAD16-like Gene Family AT5G22750 27.157 7.87e-47 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g3018 SNF2_N 1.6e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3018 K14439 - gmx:100806323 1224.15