Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2999 ATGACTATGGATGATGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAAGATAAAGCGTTTGAAAATGCTTTGGCTACTTATCCCGAGGACGCTTCAGATCGATGGGAAAAGATTGCGGCGGATGTACCGGGGAAGACTATGGAAGAAATTACACAGCATTATGAGCTCTTGGTTGACGATGTTGGCCAAATTGAAGCTGGTTGTGTTCCGATACCGTCGTATAATTCTTCTTCTGAGGGATCAACGAGTCATGCTAGCGATGAAGGAGTTGGAGGGAAGAAGGGTGGCCATAGTGGTCACAATAACAACGAGTCTAACCATGGAACTAAGGCTTCAAGATCGGATCAAGAACGGCGAAAGGGTATTGCTTGGACTGAGGAAGAACACAGGTTATTTCTTCTGGGCCTAGACAAGTACGGAAAAGGCGACTGGCGAAAAGGCGATCGAGCATACATGATATCACAAGTGTCAACAACGGAGACATCTCAACGCCTCAAGGACCAATCACCGGTCAAACAAACGGTTCCTCCGGAAATTCCGCAAACAAATCAGTCAAACAAGCTCAACGGAGACATCTCAACGCCTCAAGGACCAATCACCGGTCAAACAAACGGTTCCTCCGGAAATTCCGCAAACAAATCAGTCAAACAAGCCGTTCCGTCCACAGCCGGTATACCAGGTGCTGGAATATACGCTGCCCCTTCCATCGGACAACCTATAGGAGGACCTTTAGTATCTGCCGTCGGCACCCCGGTGAACCTTTCCGGATCTCCACATATGGCATACGGTATTCGAGCACCGGTTCCCGGTACCGTTGTTCCCGGTGCACCTATGAACATGGTCCCTATGACATACCCTATGCCTCATACTTCTGGTCCTCACAGGTGA 888 0.491 MTMDDVDSSSEWSREQDKAFENALATYPEDASDRWEKIAADVPGKTMEEITQHYELLVDDVGQIEAGCVPIPSYNSSSEGSTSHASDEGVGGKKGGHSGHNNNESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRKGDRAYMISQVSTTETSQRLKDQSPVKQTVPPEIPQTNQSNKLNGDISTPQGPITGQTNGSSGNSANKSVKQAVPSTAGIPGAGIYAAPSIGQPIGGPLVSAVGTPVNLSGSPHMAYGIRAPVPGTVVPGAPMNMVPMTYPMPHTSGPHR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2999 295 CDD SANT 11 58 IPR001005 -
Psa6g2999 295 SMART sant 8 60 IPR001005 -
Psa6g2999 295 Gene3D - 122 163 - -
Psa6g2999 295 Gene3D - 10 57 - -
Psa6g2999 295 CDD SANT 123 146 IPR001005 -
Psa6g2999 295 SUPERFAMILY Homeodomain-like 118 145 IPR009057 -
Psa6g2999 295 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 283 - -
Psa6g2999 295 PANTHER TRANSCRIPTION FACTOR KUA1 7 283 - -
Psa6g2999 295 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Psa6g2999 295 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Psa6g2999 295 SUPERFAMILY Homeodomain-like 10 64 IPR009057 -
Psa6g2999 295 MobiDBLite consensus disorder prediction 72 126 - -
Psa6g2999 295 MobiDBLite consensus disorder prediction 155 189 - -
Psa6g2999 295 MobiDBLite consensus disorder prediction 110 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2999 Psa-Chr6 251954288 251958526 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g2999 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2999 - - gmx:100779792 402.519