Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2970 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAGATTAAAGCGAAAGAGCAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCAGCCTCCCATTGGAAGTCCTCTAAATGCTATTGCTACAGAAGGAGTGCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAACTCTAACCCTATGGATACGGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGTAAATGTGACAGCAGCTTTGCAGCAAATGCAGGTTCGAACTCAGCAAATCCCTCAGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGACCCTTCTTCAATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTCACATTAAAAGGATGGCCCTTAACTGGCATAGAACAAATTCGACCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGTACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAGGTTTGAATGTGAAAGAGAGTCAGCCAATTGCCAACGATGGGTCAATAGGTTCTCCAATGCAATCTACTTCATCTAAGAGCCAACTTGATAGCATGTGGACCAAAGAAGGGATGACCGAAGAAGCCCACAATGATAAGCCCAAAAGAAAGATCATTAAACCAAGATATCTAGAAGATTATGTCACTCAAGATGCAACAAATTCAGCTATGACCAGAAAAGAGTTGGCAGGCTTATCAATTGATTCAACCAAATCTTGCAAAGATTATTCTCTAGATTCTTCCTTTTGA 1242 0.4187 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNQPPIGSPLNAIATEGVLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSVNVTAALQQMQVRTQQIPQDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKESQPIANDGSIGSPMQSTSSKSQLDSMWTKEGMTEEAHNDKPKRKIIKPRYLEDYVTQDATNSAMTRKELAGLSIDSTKSCKDYSLDSSF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2970 413 Coils Coil 79 99 - -
Psa6g2970 413 SMART Lish 8 40 IPR006594 GO:0005515
Psa6g2970 413 MobiDBLite consensus disorder prediction 324 369 - -
Psa6g2970 413 Pfam LisH 10 36 IPR006594 GO:0005515
Psa6g2970 413 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 361 - -
Psa6g2970 413 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Psa6g2970 413 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 361 IPR044716 GO:0003714
Psa6g2970 413 MobiDBLite consensus disorder prediction 354 369 - -
Psa6g2970 413 MobiDBLite consensus disorder prediction 326 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2970 Psa-Chr6 249546457 249549576 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Psa6g2970 LisH 6.1e-08 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2970 - - gmx:100797756 561.607