Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2954 ATGCTCCCTCCTAACAACAACGTTCGCATTTCCAACATCATTACTCTCCTCTTTCTCTTCCTCTGTCTCTCCATTCCCCTCACTTCATCTCTCAACTCAGACGGTCTCTCATTACTCGCCCTAAAAGCCGCCATCGACGTCGACCCCACCGGAATCCTCAACTTCTGGTCCGACTCAGTTCCCACACCCTGTAACTGGGAAGGAGTATCATGCACCAACAACGACCGAGTCACTCAACTCACCCTCCCTTCAAAATCCCTCTCAGGCTACTTACCCTCCGAGTTAGGCCAACTCACTGAACTCACCTCCCTTATTCTCCACAACAACAATTTCACCAAAACCATTCCTTCTTCACTCTTCAACACCACCAACAAACTCATCGTCTTAGATCTTTCTCACAATTCTCTCACCGGTCCTCTTCCATTATCATTCACTTCACTCAAATCTCTCATCCATTGTGATTTATCTTCCAACTTTCTCAACGGCTCTATTCCGGACACTTTAACCGAACTCACCGCTTTAACCGGAACTTTGAATCTCTCTTTTAACAGCTTCTCCGGTGGGATACCGGCTTCTTTAGGTAATCTTCCGGTGGAAGTTAGTTTGGATCTCCGTGATAACAACCTCACTGGCGAAATACCTCAGGTGGGGTCCTTGATGAATCAAGGACCCACTGCTTTTTCCGGAAATCCCGGACTTTGCGGGTTTCCATTACGGGACCTTTGTCCGGATGGGGATAAGGTTCCGGATCGTTTGCCGGAAGACCCGAATCCGAACCCAATTGCTATTCAAACGGGTTCGGTTCAAGATCAGAGGCAAGGGAGTGGGTTGTTGGTTGTTGTTGTTGTGGTTTTGATTTCTCTCGGGGGTGTGGTGGTTTTGATGTCGGTGTTGGCACTCAGGCGACGGAAGAGGTTGAATGAAGGGGAAGGTGAAGGTGGGTTTGAAAAGAGGAAGGTGGAGAGTGAGGTTTTGGGTTCTGGGGAAGAGCAGAAGGGTAGATTTGTGGTGTTGGATGAAGGGTTTGGGTTGGAGTTGGAGGATTTGTTGAGGGCTTCTGCTTATGTAGTGGGGAAGAGTAGGAGTGGGATTGTGTATAAGGTTGTTGGTGTTGGGAAAGGGTTGGTTCCGGCGGGGACGGCGGTGGCCGTTCGGCGGCTGAGTGAAGGTGATGATGGAGGTTTAAGGTTCAAGGAATTTGAGTATGAGGTGGAAGCTATTGGGAGGGTGAGACACCCTAATGTAGTACCTTTGAGAGCTTATTACTATGCAAGTGATGAGAAACTTCTTATCACTGATTTCATTCGCAATGGAAGCTTGCACACTGTTTTGCATGGTGGACCATCCGATTCGTTGCCACCATTATCATGGCCAGCAAGATTAAGAATTGCTCAAGGAACTGCAAGGGGATTGATGTACATACACGAGTTTAGTGGTAGGAAGTACGTCCACGGCAACGTAAAATCGACGAAAATACTATTGGATGATGATCTCCATCCTTATATATCCGGTTTCGGACTTACCCGTCTTGGTTTAGGTATGTCAAAGTCTACCACCACCACTTTCACGCATAGGCGGCAAAATTCGAACCAGTCTATTGTAGCCTCAGCAATGAGTTCAAAAGTCGCTGCTTCCTCTAAGAACTACATGGCACCCGAGTTGCGTGTGACTGGAGCAAAGTTCACTCAGAAATGTGACGTGTATTCTTTTGGTATAGTGTTGTTAGAACTTTTGACGGGTCGGTTGCCGGATTTAGGACCAGAAAATGATCAGAAGGAGCTTGAGAGTTTTGTGAGGAAAGCATTTAGGGAGGAACAGCCCTTGTCAGAGATCATCGATCCGGCACTTCTGCCCGAGGTTAATGCTAAAAAACAGGTTGTTGCAGCGTTTCATGTTGCGCTGAACTGCACAGAACTTGATCCGGAGTTGCGACCGAAAATGAGAACTGTGTCTGAGAGCCTTGATCACATCAAAATTCAGTAA 1983 0.474 MLPPNNNVRISNIITLLFLFLCLSIPLTSSLNSDGLSLLALKAAIDVDPTGILNFWSDSVPTPCNWEGVSCTNNDRVTQLTLPSKSLSGYLPSELGQLTELTSLILHNNNFTKTIPSSLFNTTNKLIVLDLSHNSLTGPLPLSFTSLKSLIHCDLSSNFLNGSIPDTLTELTALTGTLNLSFNSFSGGIPASLGNLPVEVSLDLRDNNLTGEIPQVGSLMNQGPTAFSGNPGLCGFPLRDLCPDGDKVPDRLPEDPNPNPIAIQTGSVQDQRQGSGLLVVVVVVLISLGGVVVLMSVLALRRRKRLNEGEGEGGFEKRKVESEVLGSGEEQKGRFVVLDEGFGLELEDLLRASAYVVGKSRSGIVYKVVGVGKGLVPAGTAVAVRRLSEGDDGGLRFKEFEYEVEAIGRVRHPNVVPLRAYYYASDEKLLITDFIRNGSLHTVLHGGPSDSLPPLSWPARLRIAQGTARGLMYIHEFSGRKYVHGNVKSTKILLDDDLHPYISGFGLTRLGLGMSKSTTTTFTHRRQNSNQSIVASAMSSKVAASSKNYMAPELRVTGAKFTQKCDVYSFGIVLLELLTGRLPDLGPENDQKELESFVRKAFREEQPLSEIIDPALLPEVNAKKQVVAAFHVALNCTELDPELRPKMRTVSESLDHIKIQ* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2954 660 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Psa6g2954 660 Gene3D Ribonuclease Inhibitor 28 88 IPR032675 -
Psa6g2954 660 Gene3D Ribonuclease Inhibitor 89 248 IPR032675 -
Psa6g2954 660 SUPERFAMILY Protein kinase-like (PK-like) 356 654 IPR011009 -
Psa6g2954 660 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 13 660 - -
Psa6g2954 660 Gene3D Phosphorylase Kinase; domain 1 343 434 - -
Psa6g2954 660 SUPERFAMILY L domain-like 33 240 - -
Psa6g2954 660 Pfam Protein kinase domain 357 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2954 660 ProSiteProfiles Protein kinase domain profile. 351 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2954 660 Gene3D Transferase(Phosphotransferase) domain 1 435 660 - -
Psa6g2954 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 660 - -
Psa6g2954 660 Pfam Leucine rich repeat 100 158 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2954 Psa-Chr6 247522484 247526253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2954 31 658 Receptor kinase-like Gene Family AT3G57830 57.143 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa6g2954 Pkinase 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2954 - - gmx:100796011 809.29