Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2953 ATGGATCGTTTAATTGAGAGTCCTCTTGAAAGTTTTGAGAATGAAACTGATCCCAATGAGTCAAGGAATGTTGGTTCAGTAACAAAGGAGAATGAAGGAAATGAAGTAAAAAAAACAAAAAGAGTTAAAAAGATCACTAAGAATGATATTGATCTGAAGAGCTCAAAATATCGGGGTGTTACCAAGTTGAGTAATAATCGCTATGAAGCATTTGTTTGGCAGAATAACATGAGAAAAGGAGGGAGGGGCAATAGAGTTTATATTGGGGAATTTGAAACTGAAATTGACGCTGCCAAAGCTCACGATTTATTTGCTATTGAAAAATGGGGAGAATCTACACTTACAAATTTTCCTGTGAGTGGTTACTCAAAACAAATCTCAGAAATGAAAAGCATTGGAATAATAAGCACCTCAAAGAAGGCCTTGACTAATTACATGGGTGTGTCCAGGTTTGTCGATGTTTTTCTCCACCATTCTCCCTTAAACCTTACTTCAATTTGGCTTCTCCTCCGAGTGAATGGTGATAAATGGGAGGCAAGATTGGAAAAAGGAAATGGGAGGCCAAGCCATTACTTGGGAATATTTGACACTGAAGAAAAAGCTGCTAGAGCATATGATGCAGCAACAAGAAGATTGAATAGAGATGAAGCATATACCAAATTTGATCCTGATAATGGTAATGAAGATAACTCAGAAAGCAAGGAGACTAAAAGTACAGTTTCAAATGAAGAAGCTGTAATTGTGGATGATAATGATGTTTTTCAACACAATGAAGAATACCAATATCACAAAGCACTGCTGCACCAACATGATGACATCGACCCATCTGCTCCGATGGTGCTGTATAATTTCATTTATAATTCATTTTATGTAGTTGGAAAAGATGGAATAATCAATTCGGGAGATTCTTCAAACCAAGGAGCGGAAGATTGA 933 0.3676 MDRLIESPLESFENETDPNESRNVGSVTKENEGNEVKKTKRVKKITKNDIDLKSSKYRGVTKLSNNRYEAFVWQNNMRKGGRGNRVYIGEFETEIDAAKAHDLFAIEKWGESTLTNFPVSGYSKQISEMKSIGIISTSKKALTNYMGVSRFVDVFLHHSPLNLTSIWLLLRVNGDKWEARLEKGNGRPSHYLGIFDTEEKAARAYDAATRRLNRDEAYTKFDPDNGNEDNSESKETKSTVSNEEAVIVDDNDVFQHNEEYQYHKALLHQHDDIDPSAPMVLYNFIYNSFYVVGKDGIINSGDSSNQGAED* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2953 310 MobiDBLite consensus disorder prediction 1 40 - -
Psa6g2953 310 SUPERFAMILY DNA-binding domain 172 223 IPR016177 GO:0003677
Psa6g2953 310 MobiDBLite consensus disorder prediction 216 239 - -
Psa6g2953 310 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 233 - -
Psa6g2953 310 ProSiteProfiles AP2/ERF domain profile. 144 222 IPR001471 GO:0003700|GO:0006355
Psa6g2953 310 ProSiteProfiles AP2/ERF domain profile. 56 118 IPR001471 GO:0003700|GO:0006355
Psa6g2953 310 CDD AP2 55 120 IPR001471 GO:0003700|GO:0006355
Psa6g2953 310 SUPERFAMILY DNA-binding domain 55 120 IPR016177 GO:0003677
Psa6g2953 310 Pfam AP2 domain 174 212 IPR001471 GO:0003700|GO:0006355
Psa6g2953 310 Pfam AP2 domain 55 110 IPR001471 GO:0003700|GO:0006355
Psa6g2953 310 Gene3D AP2/ERF domain 55 120 IPR036955 GO:0003700|GO:0006355
Psa6g2953 310 Gene3D AP2/ERF domain 170 223 IPR036955 GO:0003700|GO:0006355
Psa6g2953 310 MobiDBLite consensus disorder prediction 216 242 - -
Psa6g2953 310 MobiDBLite consensus disorder prediction 12 30 - -
Psa6g2953 310 SMART rav1_2 170 228 IPR001471 GO:0003700|GO:0006355
Psa6g2953 310 SMART rav1_2 56 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2953 Psa-Chr6 247214562 247218743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2953 23 222 AP2-EREBP Transcription Factor Family AT1G51190 35.096 1.05e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g2953 AP2 2e-07 CL0081