Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2943 ATGGATCTTGTAAGTAGAAAATTATTGATCCATTTTTCACAACATGGGTTGGAATCACAATCACAATCACATTCACAATCACAAGCTATTTCTCCAATAACAAGTTCTTCGAGTTCAATCTTTCATCCTCATATGCATCATTCTAGCACAAGCTTTCCAATCATAGCAATTGCTATAATCGGAATATTAGCAACAGCTTTCTTGCTTGTTTCCTACTACATCTTTGTCATCAAATGTTGTCTCAATTGGCACCGTATCGACCTTCTCCGACGATTCTCACCGTCTCGAAGACGGCAAGATCCGACAACAGGTTATTCACCGGGGACAGAGCCTCGCGGCCTCGAAGAGGCCGTGATTAGGCTAATCCCGGTGATTCATTTCAAATCAGAAGATGAAAATACAGACTCTGCCGAATGTGCTGTTTGTTTGAATGATTTTCAACAAGATGAGAAACTTCGGATTATACCGAATTGCAACCATGTTTTCCACATTGATTGCATTGATGTTTGGTTACAAAACAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCTTTGACAAAAGGATACCATTTTGATCAAATGCTTCAACATAGCCCCTTTTCAGTTTCAACTCAAGATCAAAATCAGCATAATGATGAAGATTTTGTTGTGATTGAATTGAGTAACAATGATGCAATGGAGTTATCATTACCATTACCATTACCATTACCATTGCCAAGAGCAAGTTCTATTAGTCTTTCGCCGAGAAAGAGTCGAAAAAAGTTGCATAAAGTGACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGAACAGTTTTCAGTTCAACCAATTAGAAGATCATTTTCAATGGATTCATCAGGGGATAGACAGTTTTATCTAGCGGTTCAAGAAGCTCTGCATCAACAAAAGAGGCAAATCAATGAAGTTAACAACTCCATTGAAGGATGCAGTGGCGGTGGCGGTGGCGGTGGTGGTGGAAGCGGTAGGGTGAAGAAATCATTTTTTTTATTTGGATATGGAAGTAGATCTAGAAGTTCTGTTCAACCTGTTTATTTAGATTCTTGA 1080 0.3833 MDLVSRKLLIHFSQHGLESQSQSHSQSQAISPITSSSSSIFHPHMHHSSTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTGYSPGTEPRGLEEAVIRLIPVIHFKSEDENTDSAECAVCLNDFQQDEKLRIIPNCNHVFHIDCIDVWLQNNANCPLCRTSISLTKGYHFDQMLQHSPFSVSTQDQNQHNDEDFVVIELSNNDAMELSLPLPLPLPLPRASSISLSPRKSRKKLHKVTSMGDECIDIRATKDEQFSVQPIRRSFSMDSSGDRQFYLAVQEALHQQKRQINEVNNSIEGCSGGGGGGGGGSGRVKKSFFLFGYGSRSRSSVQPVYLDS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2943 359 PANTHER RING-H2 FINGER PROTEIN ATL16 28 358 - -
Psa6g2943 359 SMART ring_2 139 180 IPR001841 -
Psa6g2943 359 CDD RING-H2_PA-TM-RING 138 181 - -
Psa6g2943 359 Pfam Ring finger domain 138 181 IPR001841 -
Psa6g2943 359 PANTHER RING-H2 FINGER PROTEIN ATL16 28 358 IPR044600 GO:0016567|GO:0016740
Psa6g2943 359 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Psa6g2943 359 SUPERFAMILY RING/U-box 126 190 - -
Psa6g2943 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2943 Psa-Chr6 245239982 245241464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2943 43 358 C3H Transcription Factor Family AT1G04360 50.139 3.01e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2943 - - gmx:100775286 415.616