Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2927 ATGTGTCATCACCCTCAGCTCTTCCAAGTCCTTCTTGCTGGTCGCATGGTAGAACGAAGAAAGATACTTCTGATGCATAGAAAACCAGTCCAACAAAAGCTATTGAAGCTGTTCAAAACAAGGCACCGCAGTCCAACAAAAGCTATTGAAGCTGTTCAAAACAAGGCACCGCAGGTAGTGAAAATTGAGAATGAGGATGTAAAGCCAGCGCAACAGCAAAAACCGCAAACAAATGAAGGTGTTGTTGCTACACCTGCAAAACGAAAGAGGCCTCGCAATGTGAAGAGACTAGCAAGTGCAGGACTTAAAGCAGATTCGGTTTTACAGCGAAAAACGGTTAGTCTTAAGGAGTTTTATAATTTGGGACAAAAACTTGGACAAGGGCAATTTGGAACAACGTTTCTTTGTGTGGAGAAGGCAACTGGGAAAGAGTATGCGTGTAAGTCTATCTTGAAGAGGAAGTTGTTGACGGATGAGGATCTGGAAGATGTGAGGAGAGAGATTCAGATTATGCATCACTTGGCTGGGAGCGAAAACATAGTTTCGATTAAGGAAGCTTCTGAAGATGCTGTTGTTGTTCATGTTGTTATGGAGTTGTGTTCAGGTGGTGAGCTTTTTGATAGGATTGTGGAAATAGGGCATTATACGGAGAGAAAAGCGGCTAAACTTGCACGGACTATTGTTGGTGTTATTCAGTCATGTCATTCTCTCGGAGTAATGCATCGTGATCTTAAGCCGGAGAGTTTTCTTTTTGTTAATCAGCAGGAAGATTCTCCTCTTAAGGCAATAGGTTTTGGACTATCTTCTTTTTTTAAACCAGGTGACATTTTCAATGATGTAGTAGGAAAAGCAGATGTTTGGAGCGCCGGTGTCATCTTGTACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAGGAGATATTTGAGGCCATTTTGCATAGTGATCTTGATTTCACATCAGATCCATGGCCTGGTATATCTGAAAGTGCAAAAGACTTGGTTCAGAAGATGCTTGTTAGAGATCCTAGTAAACGGTTATCAGCTTTTGACGTTCTTCGTCACCCCTGGATTCAGGTTGATGGAGCAGCCCCAGACAAGCCTCTTGATTCTGCAGTTTTTGAGTCGCATGAAACGGATGTTGATAATAGTGGTACAATTGACTATGGAGAGTTCATAGCTGCAACATTGCATTTAAATAAAGTTGATAGGGAAGATCATTTAGTTGCCGCTTTCTCATATTTTGACAAAGATGGAAGTGGGTTCATCACTCGAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCTTAGGGGACGTTGCTTGGAGGAAATGA 1344 0.4219 MCHHPQLFQVLLAGRMVERRKILLMHRKPVQQKLLKLFKTRHRSPTKAIEAVQNKAPQVVKIENEDVKPAQQQKPQTNEGVVATPAKRKRPRNVKRLASAGLKADSVLQRKTVSLKEFYNLGQKLGQGQFGTTFLCVEKATGKEYACKSILKRKLLTDEDLEDVRREIQIMHHLAGSENIVSIKEASEDAVVVHVVMELCSGGELFDRIVEIGHYTERKAAKLARTIVGVIQSCHSLGVMHRDLKPESFLFVNQQEDSPLKAIGFGLSSFFKPGDIFNDVVGKADVWSAGVILYILLCGVPPFWGESEQEIFEAILHSDLDFTSDPWPGISESAKDLVQKMLVRDPSKRLSAFDVLRHPWIQVDGAAPDKPLDSAVFESHETDVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSYFDKDGSGFITRDELQKACEEFGLGDVAWRK* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2927 447 Pfam EF-hand domain 412 437 IPR002048 GO:0005509
Psa6g2927 447 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Psa6g2927 447 Pfam Protein kinase domain 119 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2927 447 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
Psa6g2927 447 Gene3D - 381 406 - -
Psa6g2927 447 MobiDBLite consensus disorder prediction 66 89 - -
Psa6g2927 447 SUPERFAMILY Protein kinase-like (PK-like) 110 388 IPR011009 -
Psa6g2927 447 PANTHER CALCIUM-DEPENDENT KINASE 62 377 - -
Psa6g2927 447 PANTHER CALCIUM-DEPENDENT KINASE 382 444 - -
Psa6g2927 447 Gene3D Transferase(Phosphotransferase) domain 1 161 362 - -
Psa6g2927 447 ProSiteProfiles Protein kinase domain profile. 119 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2927 447 CDD STKc_CAMK 118 360 - -
Psa6g2927 447 SUPERFAMILY EF-hand 381 438 IPR011992 -
Psa6g2927 447 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Psa6g2927 447 SMART efh_1 376 402 IPR002048 GO:0005509
Psa6g2927 447 SMART efh_1 410 438 IPR002048 GO:0005509
Psa6g2927 447 Gene3D Phosphorylase Kinase; domain 1 123 199 - -
Psa6g2927 447 PANTHER SERINE/THREONINE-PROTEIN KINASE 62 377 - -
Psa6g2927 447 PANTHER SERINE/THREONINE-PROTEIN KINASE 382 444 - -
Psa6g2927 447 ProSitePatterns Protein kinases ATP-binding region signature. 125 152 IPR017441 GO:0005524
Psa6g2927 447 Gene3D - 407 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2927 Psa-Chr6 244307916 244311217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2927 57 443 EF-hand Containing Proteins AT3G10660 58.439 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa6g2927 Pkinase 3.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2927 K13412 - gmx:100783079 551.592