Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2926 ATGGGAAACTGCTGTACAATTCCAAATGTCAAGAACCGGAAACAAAAAACAAAGGAAAAGCCCGAGAAAGATGGAAAGACGAAGACGAAGACGAAGAAAAACAACAAGAATAATACCAAACTGGAGGTGTTAAAAGAGCCCACGGGCCGAGAGATTGGGCTTAGTTACGAATTGGGGAGGGAACTAGGGAGAGGAGAATTCGGTATAACGTATCTGTGCAAAGATAGAAAAACGGGACAGGAATTGGCGTGCAAATCGATTTCGAAGAATAAGCTTCGAACAGCGATTGATATTGAAGATGTGAGAAGAGAAGTTGATATCATGAGGCATTTACCTAAACACCCTAACATCGTTACGTTGAAGGATACGTATGAAGATGACGATGACGTTCATCTTGTTATGGAACTTTGTGAAGGTGGTGAACTTTTCGATCGCATCGTTGCTAGAGGTCATTATACCGAACGCGCCGCTGCTTCCGTCGTTAGAACCGCCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCACAGGGATCTTAAACCCGAGAACTTTTTATTTGCTGACAAAAAGGAAACATCGCCTTTGAAGGCTATTGACTTTGGTTTGTCAATTTTCTTTAAACCAGGTGAAAGATTTAATGAGATAGTTGGAAGTCCATACTATATGGCTCCTGAAGTGTTGAAAAGAAATTATGGCCCCGAAGTTGATATCTGGAGTGCTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCTCCGTTTTGGGCAGAAACGGAGCAGGGAGTTGCTCAAGCAATTATACGGTCAGTTCTTGACTGGTCAGTTCTTGACTTCAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATCCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCAAAGACAGCTCCTGATGTTTCATTAGGGGAAACTGTTAGAGCAAGGCTGATGCAATTTTCCGTAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATTAAAGAGGGATTCCATGTGATGGACACAGAAAATAATGGAAAAATTAATGTTGATGAGCTTCGAGTAGGGTTGCAAAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTAATGGAAGCTGGGGATGTAGACAAAGATGGTTACCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATATCCCATGATGAACACCTCCACAGAGCATTCCAATTTTTTGATAAAAATGAATCTGGGTATATTGAACTCGTGGAGTTACGTAGTGCCTTAGATGATGAGATTGACAAAAACAGTGAAGAAGTCATAAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTACGAGGAATTTGCTGCAATGATGAAGGCTGGAACAGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGGTTTAACAGTCTAAGTCTGAAACTGATGAAGGAGGGGTCAATAAAATTGAGCGATGAGGCTAGATGA 1614 0.4151 MGNCCTIPNVKNRKQKTKEKPEKDGKTKTKTKKNNKNNTKLEVLKEPTGREIGLSYELGRELGRGEFGITYLCKDRKTGQELACKSISKNKLRTAIDIEDVRREVDIMRHLPKHPNIVTLKDTYEDDDDVHLVMELCEGGELFDRIVARGHYTERAAASVVRTAVQVVQMCHKHGVMHRDLKPENFLFADKKETSPLKAIDFGLSIFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVLDWSVLDFKREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKTAPDVSLGETVRARLMQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFHVMDTENNGKINVDELRVGLQKLGHQIPDGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLHRAFQFFDKNESGYIELVELRSALDDEIDKNSEEVINAIMHDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFNSLSLKLMKEGSIKLSDEAR* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2926 537 Gene3D - 328 502 - -
Psa6g2926 537 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 16 516 - -
Psa6g2926 537 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Psa6g2926 537 MobiDBLite consensus disorder prediction 8 39 - -
Psa6g2926 537 Pfam EF-hand domain pair 437 500 IPR002048 GO:0005509
Psa6g2926 537 Pfam Protein kinase domain 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2926 537 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Psa6g2926 537 ProSitePatterns Protein kinases ATP-binding region signature. 62 85 IPR017441 GO:0005524
Psa6g2926 537 Gene3D Phosphorylase Kinase; domain 1 58 141 - -
Psa6g2926 537 SMART serkin_6 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2926 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Psa6g2926 537 CDD STKc_CAMK 56 318 - -
Psa6g2926 537 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Psa6g2926 537 SUPERFAMILY EF-hand 343 512 IPR011992 -
Psa6g2926 537 SUPERFAMILY Protein kinase-like (PK-like) 55 330 IPR011009 -
Psa6g2926 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 516 - -
Psa6g2926 537 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Psa6g2926 537 SMART efh_1 474 502 IPR002048 GO:0005509
Psa6g2926 537 SMART efh_1 366 394 IPR002048 GO:0005509
Psa6g2926 537 SMART efh_1 402 430 IPR002048 GO:0005509
Psa6g2926 537 SMART efh_1 438 466 IPR002048 GO:0005509
Psa6g2926 537 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Psa6g2926 537 Gene3D Transferase(Phosphotransferase) domain 1 142 327 - -
Psa6g2926 537 Pfam EF-hand domain pair 379 425 IPR002048 GO:0005509
Psa6g2926 537 CDD EFh 438 500 IPR002048 GO:0005509
Psa6g2926 537 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Psa6g2926 537 MobiDBLite consensus disorder prediction 12 39 - -
Psa6g2926 537 ProSiteProfiles Protein kinase domain profile. 56 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2926 Psa-Chr6 243656188 243660428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2926 1 535 EF-hand Containing Proteins AT5G19450 74.488 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa6g2926 Pkinase 8.3e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2926 K13412 - cpap:110811275 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2926 6 243656188 243660428 Psa6g2926 6 243656188 243660428 ECH