Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2925 ATGGAGAAAATGGCACTCACTTCTCAGAACTCTCTATTATTCTCATCCACAACACTTCCAAAGCATCCTTCTTCTTCTCCACTCTTCTTTTCTAAACGTAACAACCTTTTTGGACTTCCTTTATCTTCTTCCAAACCAACTCTTCGAATTTCTTCAAGGAACAATAGGTCAATCAAATGTTCAATTTCCGAAGTCACTGAGCCGAAAACTGAGAAGAAGAAATTGATGAGAAGAGCAGATATTAGAAATATCGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTCGTTGATGCCATGCTCAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTACAAGAAAGGATAATGGACTCTAATGATTTGGAGCGTGAAAGAGGAATCACTATACTGAGTAAAAATACATCTGTTACTTATAAAGATGCCAAGATTAATATCATTGATACTCCTGGTCACTCTGATTTTGGAGGTGAAGTTGAACGTATCTTGAATATGGTCGAAGGAATCCTTCTAGTGGTAGATTCCGTCGAAGGGCCAATGCCGCAGACAAGGTTTGTCTTAAAGAAGGCTTTAGAGTTTGGTCATGCGGTTGTTGTGGTTGTGAATAAAATAGATAGGACTTCTGCTCGCCCTGATTTTGTTGTCAATTCTACCTTTGAACTCTTCATTGAGCTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATTAAAGGGAAAGCAGGGCTGTCTCCTGAAGATCTGGCAGACGACCTTGGGCCATTGTTTGAATCCATCATGAGATGTATCCCTGGACCACGTATTGATAGAGATGGCTCACTCCAAATGCTTGTTACAAGTACCGAGTATGAAGGACATAAAGGGCGTATAGCAATTGGGCGCTTGGAAGCTGGGGTTTTAGAAAAAGGAATGGAAGTCAAGATTTGCACTTCAGAAGATTCATGTAGATATGGAAGAGTTAGCGAGCTTTATGTGTACGAAAAATTCTTTAGGGTCCCTGCCGAAAGGGTGGAGGCTGGGGATATATGTGCAGTATGTGGAATTTCTGATATTCAGATTGGGGAGACAATTGCGGATAAATTGACTGGGAAGGCACTACCGTCCATTAAAGTGGAAGAACCAACAGTAAAAATGGCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACCAGTAGGAATTTAAGGGACAGACTTTATCGCGAGCTTGAGAGAAATCTGGCTATGAAGGTTGAAGATGGTGAAACAGCTGATACATTCATTGTCAGCGGTCGTGGAACTCTGCATATCACCATACTCATTGAAAATATGCGAAGGGAAGGATTTGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAGGGTTAATGACAAAGTGTTGGAGCCGTATGAGATTGCAACTGTGGAGGTACCGGAAGTGCACATGGGAGCTGTTGTTGAACTTCTTGGCGGGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGTCTACTTGGATTGCGTAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTATTTGATTGTTATGGGCCTTGGGCTGGTGACATGAATACTCGGGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACAAGTACTTCTTATGCAATCGCTAGTTCCCAGGAGAGGGGGCATATGTTTATAGGTCCTGGAGCAGAAGTTTATAAAGGTCAAATTATTGGCATCCATCAACGCTCTGGAGACTTGTCCTTGAATGTTTGCAAGAGAAAAGCTGCAACGAATATTCGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCATTGGATTATAGTTTGGATGACTGCATTGAATACATTCAAGAAGACGAACTAGTAGAGGTCACCCCCCAAAGTATAAGAATGTGCAAGAATCCAAAACTTGCAAAGAAAGGAAAGTAG 2022 0.4164 MEKMALTSQNSLLFSSTTLPKHPSSSPLFFSKRNNLFGLPLSSSKPTLRISSRNNRSIKCSISEVTEPKTEKKKLMRRADIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRTSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPEDLADDLGPLFESIMRCIPGPRIDRDGSLQMLVTSTEYEGHKGRIAIGRLEAGVLEKGMEVKICTSEDSCRYGRVSELYVYEKFFRVPAERVEAGDICAVCGISDIQIGETIADKLTGKALPSIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGFEFMVGPPKVINKRVNDKVLEPYEIATVEVPEVHMGAVVELLGGRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTVFDCYGPWAGDMNTRDLGSLVAFEGGTSTSYAIASSQERGHMFIGPGAEVYKGQIIGIHQRSGDLSLNVCKRKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKGK* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2925 673 Pfam Elongation factor Tu domain 2 295 364 IPR004161 GO:0005525
Psa6g2925 673 Gene3D bipa protein 559 638 IPR042116 -
Psa6g2925 673 SUPERFAMILY EF-G C-terminal domain-like 379 463 IPR035647 -
Psa6g2925 673 Pfam Elongation factor G C-terminus 472 556 IPR000640 -
Psa6g2925 673 PANTHER BNAC09G43450D PROTEIN 55 673 - -
Psa6g2925 673 Gene3D Translation factors 275 375 - -
Psa6g2925 673 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 79 274 IPR000795 GO:0003924|GO:0005525
Psa6g2925 673 CDD TypA_BipA 80 273 - -
Psa6g2925 673 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 81 669 IPR006298 GO:0005525
Psa6g2925 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 282 IPR027417 -
Psa6g2925 673 SUPERFAMILY Translation proteins 227 370 IPR009000 -
Psa6g2925 673 CDD BipA_TypA_C 474 553 IPR035651 -
Psa6g2925 673 SMART EFG_C_a 471 560 IPR000640 -
Psa6g2925 673 CDD BipA_III 381 459 - -
Psa6g2925 673 Gene3D - 465 558 - -
Psa6g2925 673 PRINTS GTP-binding elongation factor signature 83 96 IPR000795 GO:0003924|GO:0005525
Psa6g2925 673 PRINTS GTP-binding elongation factor signature 127 135 IPR000795 GO:0003924|GO:0005525
Psa6g2925 673 PRINTS GTP-binding elongation factor signature 147 157 IPR000795 GO:0003924|GO:0005525
Psa6g2925 673 PRINTS GTP-binding elongation factor signature 199 208 IPR000795 GO:0003924|GO:0005525
Psa6g2925 673 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 120 135 IPR031157 -
Psa6g2925 673 Gene3D - 78 274 IPR027417 -
Psa6g2925 673 SUPERFAMILY EF-G C-terminal domain-like 474 588 IPR035647 -
Psa6g2925 673 TIGRFAM small_GTP: small GTP-binding protein domain 81 230 IPR005225 GO:0005525
Psa6g2925 673 CDD BipA_TypA_II 281 374 - -
Psa6g2925 673 Gene3D Elongation Factor G (Translational Gtpase), domain 3 382 665 - -
Psa6g2925 673 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 55 673 - -
Psa6g2925 673 Pfam Elongation factor Tu GTP binding domain 80 271 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2925 Psa-Chr6 243348021 243360844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2925 81 208 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 7.48e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2925 K06207 - gmx:100785222 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2925 6 243348021 243360844 Psa6g2925 6 243348021 243360844 ECH