Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2921 ATGGCTTCCTTTTCCAACTCCATTGGTGAAATTTCATGGATTTGTCTCAACAATTTTGATTTCACTTCTTTATGCTTTCAAAGGACCTTAATTGACACAATCAACATACTCTTTCTCTCTCTCTACTTCACATCTTTGCTTATCACTTTCATCACAAAAACTTCATCAAATCAAAGCCATACAAAATGCTGGATTTTTCTTATTACCTCAATCTGTTGTGCTATTGTTAGCATTGTGTTTTCCACTGTTGGATTGTGGAATATCATATCTGAATCTGAGCAACTGAAATGGTTAACTTGCTTTATCAGAGGAATCACTTGGCTTTCTTTTTCTGTTTCTTTGAGTCAGAGAGTCAAATGGATAAGAATATTAAACTCTATATGGTGGTTATTTTCTTGTGTGTTGGTTTCATCTCTCAACATTGAAATTTTATTCCAAAATCATGCAATTGGAACTTTTGATATTGTACAGTGGCTTGTACATTTCCTTCTTCTATATTGTGCATTTAAAAATATTGGTTTTTTGGGAACTCATAGTGTCCAACAAGGTTTATCTGAGCCACTATTAGATCAAAAATTTAAAACTAAACAAACAGGACTTGGTCATGCTACTTTTCTCAGCAAGTTGGTTTTCTCTTGGATGAATTCTTTACTCATTTTAGGTTACTCAAAGCCACTAGATCTTGATGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCCTATCAAAAATTTGTTCATGCCTGGAAATCACTTGTTAGAGAGAGAGCAAGGAATAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTGGGAGAAAACATATTAATAGCATTTTATGGATTAATCAGAACTGTTTCTGTTGCTGTTTCACCTCTCATACTCTATGCTTTTGTTAAATACTCCAATAGAACTGAGCCAGATCTTAGACAAGGTCTTTCCATAGTTGGTTTTTTGATTGTCACCAAACTGTTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGGTTGAAAATGAGGTCAGCTCTGATGGTAGCAGTTTATCAAAAGCAGCTAAAGCTTTCTAACTCGGCAAGGACACGACACTCGGCTGGAGAAATTGTGAATTATATTTCTGTGGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATGACATGGACTTCTGCGTTGCAACTTGTTCTTTCCATTGGTGTCCTTTATAGTGTTGTTGATATTGGTGCTCTTCCTGGTTTGGTCCCTCTTCTTATATGTGGACTTCTTAATGTACCATTTGCAAAAATCCTACAAAATTGCCAGTCACAGTTTATGATTGCACAGGACAAGCGTCTTAGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAATTTACTCCAGTCGCTACGCGATAAAGAGTTTGTATGGTTGTCTAAGGCAGCGATCTTGAAAGCTTCTAGTTCATTTCTTCTTTATTGGATGTCTCCTACTGTTATTTCTGCTGTTGTTCTCATTGGATGTGGTGGTTACCCAGAGTGCACCATTGAATCTGAAACTAATTTTCACAGTTCTTATGTAAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAAATTCATAAGATATCAGGAACTATTAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGCTTTAGATAAGGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACCTGAGTGGAGGACAGAAACAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGACGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGATTGTGTCATGACTGCTTTAAGAGAGAAAACTGTCATTCTAGTTACACATCAAGTGGAGTTTCTCTCGGAAGTTGATACTATCTTGGTAATGGAACGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAGTCTCCTAACAGCAGGAACAGCCTTTGAAATACTTGTGAGTGCTCATAAAGACACAATCACTGAGTTGAATCAAGATAATGAACATAAAAGAGGTTTTGAAACCGAAGTTTTGTCTAATCCTCAAAACTCTCAAGGTTTTTATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTTGTATCAAGGGTCCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATTGGTAATGTTGGATGGAAGCCATTCTGGGATTATGTTAATTATTCAGAAGGGACATTCATGTTGTGTTTCATCCTGTTAGCGCAGTCTGGTTTCATGGCTTTTCAAACTGCATCAACCTTCTGGCTTGCTATAGCCATAGAAATTCCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATACATTAGTTTCTTTTGCTAGTGCTGCTTTTGTATATGCAAGGTCTTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACCACTTTCTTCTCAAAATTCACTACAGCTATGTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCATTGTAGCAAGTTTAGCACTTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCATCCGAGACATCAGTTGGAGTGGTTACTGTAAGAGCATTACACAGATGCTTCATTGTTCTTTCATTCCAATGCGGCAATGGAATGGTAGTGATTGAAGCACTTCAAAATTTGACTGTCGTCACTGCATCTTTGTTGATTATTCTACTTCCTCATGGATATGTATCCCCAGGTCTTGTGGGGCTGTCTCTTTCTTATGCTTTTACCTTGACATCAACCCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCCAACAATATTATATCTATTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCTATTGTGGATAATAACCGGCCACCATCCTTGTGGCCTTCCAAGGGAAAGATTGATCTTCAAGACTTGGAGATCAGATATCGTCCTAATGCTCCATTAGTTCTAAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTCGGAAGGACTGGAAGTGGAAAAAGTACACTGATCAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGCTACTGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGAGAGGAATTTGAGAATGTACAGTTAATAACAGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTTTTATCTTATGGGAAACTGATGGAATACGATGAACCTTCAAAGCTAATGGATACAAACTCTTCATTCTCTAAGCTGGTTGCTGAATATTGGTCCAGTCGCAGGAAGAATTCATTTCCAAATATTAGCAGACAACAACAATGA 3810 0.3703 MASFSNSIGEISWICLNNFDFTSLCFQRTLIDTINILFLSLYFTSLLITFITKTSSNQSHTKCWIFLITSICCAIVSIVFSTVGLWNIISESEQLKWLTCFIRGITWLSFSVSLSQRVKWIRILNSIWWLFSCVLVSSLNIEILFQNHAIGTFDIVQWLVHFLLLYCAFKNIGFLGTHSVQQGLSEPLLDQKFKTKQTGLGHATFLSKLVFSWMNSLLILGYSKPLDLDEIPSLVSEDEANMAYQKFVHAWKSLVRERARNNTKSLVLWSIVRTYLGENILIAFYGLIRTVSVAVSPLILYAFVKYSNRTEPDLRQGLSIVGFLIVTKLFESLSQRHWFFNSRRSGLKMRSALMVAVYQKQLKLSNSARTRHSAGEIVNYISVDAYRMGEFPWWFHMTWTSALQLVLSIGVLYSVVDIGALPGLVPLLICGLLNVPFAKILQNCQSQFMIAQDKRLRSTSEILNSMKIIKLQSWEEKFKNLLQSLRDKEFVWLSKAAILKASSSFLLYWMSPTVISAVVLIGCGGYPECTIESETNFHSSYVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIHKISGTINVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMERGKVIQSGSYESLLTAGTAFEILVSAHKDTITELNQDNEHKRGFETEVLSNPQNSQGFYLTKNQSEGEISCIKGPIGAQLTQEEEKVIGNVGWKPFWDYVNYSEGTFMLCFILLAQSGFMAFQTASTFWLAIAIEIPKVTNATLIGVYTLVSFASAAFVYARSYLTALLGLKASTTFFSKFTTAMFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITIVASLALEILVIICIMVSVTWQVLIVAVPAMVASIYIQQYYQATARELIRINGTTKAPVMNFASETSVGVVTVRALHRCFIVLSFQCGNGMVVIEALQNLTVVTASLLIILLPHGYVSPGLVGLSLSYAFTLTSTQIFWSRWFSNLSNNIISIERIKQFIHIPVEPPAIVDNNRPPSLWPSKGKIDLQDLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRATASIDSATDAILQRVIREEFENVQLITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMDTNSSFSKLVAEYWSSRRKNSFPNISRQQQ* 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2921 1269 CDD ABCC_MRP_domain1 532 721 - -
Psa6g2921 1269 SMART AAA_5 548 721 IPR003593 -
Psa6g2921 1269 SMART AAA_5 1150 1265 IPR003593 -
Psa6g2921 1269 Pfam ABC transporter transmembrane region 289 523 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2921 1269 Pfam ABC transporter transmembrane region 826 1016 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2921 1269 Gene3D ABC transporter type 1, transmembrane domain 266 527 IPR036640 GO:0005524|GO:0016021
Psa6g2921 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 829 1073 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2921 1269 CDD ABC_6TM_ABCC_D1 281 521 IPR044746 GO:0140359
Psa6g2921 1269 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 63 533 - -
Psa6g2921 1269 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 542 1178 - -
Psa6g2921 1269 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 1179 1262 - -
Psa6g2921 1269 Gene3D - 1180 1262 IPR027417 -
Psa6g2921 1269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 518 744 IPR003439 GO:0005524
Psa6g2921 1269 Gene3D - 531 766 IPR027417 -
Psa6g2921 1269 Gene3D ABC transporter type 1, transmembrane domain 794 1104 IPR036640 GO:0005524|GO:0016021
Psa6g2921 1269 Gene3D - 1107 1179 IPR027417 -
Psa6g2921 1269 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 533 - -
Psa6g2921 1269 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1179 1262 - -
Psa6g2921 1269 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 542 1178 - -
Psa6g2921 1269 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 280 522 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2921 1269 Pfam ABC transporter 542 673 IPR003439 GO:0005524
Psa6g2921 1269 Pfam ABC transporter 1141 1187 IPR003439 GO:0005524
Psa6g2921 1269 ProSitePatterns ABC transporters family signature. 646 660 IPR017871 GO:0005524
Psa6g2921 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 540 741 IPR027417 -
Psa6g2921 1269 SUPERFAMILY ABC transporter transmembrane region 812 1106 IPR036640 GO:0005524|GO:0016021
Psa6g2921 1269 SUPERFAMILY ABC transporter transmembrane region 268 523 IPR036640 GO:0005524|GO:0016021
Psa6g2921 1269 CDD ABC_6TM_ABCC_D2 823 1099 IPR044726 GO:0140359
Psa6g2921 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1065 1241 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2921 Psa-Chr6 243056332 243062433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2921 552 735 Calmodulin-binding Proteins AT2G36910 28.788 1.98e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2921 - - csin:114322443 1316.98