Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2920 ATGGTTAACTTGTATTATCAGAGGAATCATTTGGATTTCTTTTTCTGTTCTTTGATTCTTCAGAGACTCAAATGGATAAGAATATTAAACTCTATATGGTGGTTTTTTCTTGTGTGTTTGGTTTCATCTCTCAACATTGAAATTCTATTCCAAAATCATGCAATTGAAACTTTTGATATTGTACAGTGGCTTGTACATTTCCTTCTTCTATATTGTGCCATTCAAAATCTTGTTTTTTTGGGAAATCATAGTGTCCAACAAGGTTTATCTGAACCACTATTAGATCAAAAATTTGAAACTAAACAAACAGGATTTGGTCATGCTACTTTTCTAAGCAAGTTGGTTTTCTCTTGGATCAATTCTTTACTCATTTTAGGTTACTCAAAGCCATTAGATCTTGAAGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCATATCAAAAATTTGTTCATGCCTGGGAATCACTTATCAGGGTTGAAAATGAGGTCAGCTCTGATGGTAGCAGTTTATCAAAGCAACTAAAGCTTTCTAACTCGGCAAGGACACGACACTCGGCTGGAGAAATTGTGAATTACATTGCTGTGGATGCTTATAGAATGGGAGAATTTCCATGTTCTTGCAACTCTGAGGAACTTGCAGAGCCTGTTAGAATGGTCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGAAATACAAGATGGCAACTTCATTTGGGATCATGAATCTGTTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAAATTCCTAAGATATCAGGAACTGTCAACGTAGGTGGCACTTTTGCCTATGTTTCCCTCTTCATGATACAGAGTGGAACATGGCTTGTACATTTCCTTCTTCTATATTGTGCCATTCAAAATCTTGTTTTTTTGGGAAATCATAGTGTCCAACAAGGTTTATCTGAACCACTATTAGATCAAAAATTTGAAACTAAACAAACAGGATTTGGTCATGCTACTTTTCTAAGCAAGTTGGTTTTCTCTTGGATCAATTCTTTACTCATTTTAGGTTACTCAAAGCCATTAGATCTTGAAGAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACATGGCATATCAAAAATTTGTTCATGCCTGGGAATCACTTGTTAGAGAGAGAGCAAGGAATAAATCAAAGAGTTTGGTTCTTTGGTCTATTGTTAGAACTTACTTTGGAGAAAACATGTTAATAGCATTTTATGGATTAATCAGAACTATTTCTGTTGCAGTTTCACCTCTAATACTCTATGCTTTTGTTAAATACTCAAATAGAACTGAGCCAGATCTTAGACAAGGTCTTTCCATAGTTTGTTTTTTGATTGTCACCAAACTGTTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGGTTGAAAATGAGGTCAGCTCTGATGGTAGCAGTTTATCAAAAGCAACTAAAGCTTTCTAACTCGGCAAGGACACGACACTCGGCTGGAGAAATTGTGAATTACATTGCTGTGGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATATGACATGGACTTCTGCATTGCAACTTGTTCTTTCCATTGGTGTCCTTTATGGTGTTGTTGGTATTGGCGCTCTTCCTGGTTTGGTCCCTCTTCTTATATGTGGATTTCTTAATGTACCATTTGCAAAAATCCTACAAAATTGCCAGTCACAGTTTATGATTGCGCAGGACGAGCGTCTTAGATCGACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAGTTAAGAATTTACTCCAGTCGCTACGCGATAAAGAGTTTGTATGGTTGCCTAAGTTCTTGCAACTCTGAGGAACTTGCAGAGCCTGTTAGAATGGTCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTTAATAGGTTTTTGCTCGATGAAGAACTAAACAATGATGATAGTGAAAGAAAATTCAAGGAATGTTCTGTTAATGCCGTAGAAATACAAGATGGCAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAAATTCCTAAGATATCAGGAACTGTCAACGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAGAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAGAACAAGATACGAAAAAGCAATTAAAGCTTGTGCCTTAGATAAGGATATCAACGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGGATAAACCTGAGTGGAGGACAGAAACAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATACATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTGCAATACTATTCAATGATTGTGTCATGACTGCTTTAAGAGAGAAAACAGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAGTCTCCTAACAGCAGGAACAACTTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGAGTTGAATCAAGATAATAAACATAAAAGAGGTTCTGATAATGAAGTTTTGTCCAATCCTCAAAGCTCTCATGGTTTTTATCTCACTAAGAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGATCCAATTGGTACACAACTTACACAAGAGGAAGAAAAAGTGATTGGCAATGTTGGATGGAAGCCATTCTGGGATTATATAGATTATTCCAAAGGGACATTCATGGTGTGTTTCATCATGTTAGCACTATTTGCTTTCATGGCTTTTCAAACGGCATCAACCTTTTGGCTTGCTATAGCCATAGAAATTCCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATACATTAGTTTCTTTTGCTAGTGCTGCTTTTGTATATGTAAGGTCTTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAAATTCACTACAGCTATCTTCAATGCTCCAATACTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGTTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCGTTGTAGCAAGTGTAGCATTTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCATCCGAGACATCAGTTGGAGTGGTTACTACATCAGTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAACCTACTTAACACTTGTAGACACAGATGCTTCATTGTTCTTTCATTCCAATGCGGCAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATATGACTGTCATCACTGCATCTTTGTTGATTATTCTACTTCCTCATGGATATGTAGCCCCAGCCCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCAAACTATACTATATCTGTTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCCATTGTGGATAATAACCGGCCGCCATCTTCGTGGCCTTCCAAGGGAAGGATTGATCTTCAAGGCTTGGAGATCAGATATCGTCCTAATGCTCCATTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTCGAAAGGACTGGAAGTGGAAAAAGTACACTGATCAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGGATTTGAGAATGAGCTAAGCATAATCCCTCAGGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGACCCTCTTGGCCTCTACTCAGACGATGATATTCGGAAGTATTATTTTTTGCCTCATAATTTTTGGATGGTTATTACTAAAGGGAAACTGATGGAATACGACGAGCCTTCAAAGCTAATGGATACAAACTCTTCATTCTCTAAGCTGGTGGCTGAATATTGGTCCAGTTGCAGGAAGAATTCATTCCCAAATATTAGCAGACAACAATGA 4398 0.3747 MVNLYYQRNHLDFFFCSLILQRLKWIRILNSIWWFFLVCLVSSLNIEILFQNHAIETFDIVQWLVHFLLLYCAIQNLVFLGNHSVQQGLSEPLLDQKFETKQTGFGHATFLSKLVFSWINSLLILGYSKPLDLEEIPSLVSEDEANMAYQKFVHAWESLIRVENEVSSDGSSLSKQLKLSNSARTRHSAGEIVNYIAVDAYRMGEFPCSCNSEELAEPVRMVPEALSIMIQVKKYKMATSFGIMNLLSPTLADVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTFAYVSLFMIQSGTWLVHFLLLYCAIQNLVFLGNHSVQQGLSEPLLDQKFETKQTGFGHATFLSKLVFSWINSLLILGYSKPLDLEEIPSLVSEDEANMAYQKFVHAWESLVRERARNKSKSLVLWSIVRTYFGENMLIAFYGLIRTISVAVSPLILYAFVKYSNRTEPDLRQGLSIVCFLIVTKLFESLSQRHWFFNSRRSGLKMRSALMVAVYQKQLKLSNSARTRHSAGEIVNYIAVDAYRMGEFPWWFHMTWTSALQLVLSIGVLYGVVGIGALPGLVPLLICGFLNVPFAKILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKLRIYSSRYAIKSLYGCLSSCNSEELAEPVRMVPEALSIMIQVKVSFDRLNRFLLDEELNNDDSERKFKECSVNAVEIQDGNFIWDHESVSPTLADVNLEIKWRHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDRTRYEKAIKACALDKDINDFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADTYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYESLLTAGTTFELLVSAHKDTITELNQDNKHKRGSDNEVLSNPQSSHGFYLTKNQSEGEISSIKDPIGTQLTQEEEKVIGNVGWKPFWDYIDYSKGTFMVCFIMLALFAFMAFQTASTFWLAIAIEIPKVTNATLIGVYTLVSFASAAFVYVRSYLTALLGLKASTAFFSKFTTAIFNAPILFFDSTPVGRILTRVSSDLSILDFDIPYSITVVASVAFEILVIICIMVSVTWQVLIVAVPAMVASIYIQQYYQATARELIRINGTTKAPVMNFASETSVGVVTTSVGVVTVRAFNMVDRFFKTYLTLVDTDASLFFHSNAAMEWVVLRIEALQNMTVITASLLIILLPHGYVAPAQIFWSRWFSNLSNYTISVERIKQFIHIPVEPPAIVDNNRPPSSWPSKGRIDLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVERTGSGKSTLISALFRLVEPSRGFENELSIIPQEPTLFKGSIRTNLDPLGLYSDDDIRKYYFLPHNFWMVITKGKLMEYDEPSKLMDTNSSFSKLVAEYWSSCRKNSFPNISRQQ* 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2920 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1013 1270 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2920 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1307 1410 IPR027417 -
Psa6g2920 1465 CDD ABC_6TM_ABCC_D1 434 679 IPR044746 GO:0140359
Psa6g2920 1465 ProSitePatterns ABC transporters family signature. 830 844 IPR017871 GO:0005524
Psa6g2920 1465 Gene3D - 1300 1412 IPR027417 -
Psa6g2920 1465 CDD ABC_6TM_ABCC_D2 1007 1292 IPR044726 GO:0140359
Psa6g2920 1465 SUPERFAMILY ABC transporter transmembrane region 421 631 IPR036640 GO:0005524|GO:0016021
Psa6g2920 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 306 IPR027417 -
Psa6g2920 1465 Pfam ABC transporter transmembrane region 453 630 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2920 1465 Pfam ABC transporter transmembrane region 1013 1252 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2920 1465 Gene3D - 673 952 IPR027417 -
Psa6g2920 1465 Gene3D ABC transporter type 1, transmembrane domain 974 1297 IPR036640 GO:0005524|GO:0016021
Psa6g2920 1465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 705 928 IPR003439 GO:0005524
Psa6g2920 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 926 IPR027417 -
Psa6g2920 1465 Gene3D ABC transporter type 1, transmembrane domain 381 639 IPR036640 GO:0005524|GO:0016021
Psa6g2920 1465 SUPERFAMILY ABC transporter transmembrane region 996 1299 IPR036640 GO:0005524|GO:0016021
Psa6g2920 1465 CDD ABCC_MRP_domain1 705 905 - -
Psa6g2920 1465 Pfam ABC transporter 1334 1406 IPR003439 GO:0005524
Psa6g2920 1465 Pfam ABC transporter 251 296 IPR003439 GO:0005524
Psa6g2920 1465 Pfam ABC transporter 723 857 IPR003439 GO:0005524
Psa6g2920 1465 Gene3D - 229 352 IPR027417 -
Psa6g2920 1465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 434 632 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g2920 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 174 207 - -
Psa6g2920 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 307 632 - -
Psa6g2920 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 16 163 - -
Psa6g2920 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 248 310 - -
Psa6g2920 1465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 655 1409 - -
Psa6g2920 1465 SMART AAA_5 260 537 IPR003593 -
Psa6g2920 1465 SMART AAA_5 732 905 IPR003593 -
Psa6g2920 1465 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 16 163 - -
Psa6g2920 1465 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 248 310 - -
Psa6g2920 1465 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 307 632 - -
Psa6g2920 1465 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 174 207 - -
Psa6g2920 1465 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 655 1409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2920 Psa-Chr6 242841277 242849220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2920 656 916 Calmodulin-binding Proteins AT2G36910 28.159 7.11e-19 91.7