Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2909 ATGAAAAATATTTTTCTGCTTCATTTTACGGTGTGTTTATCTGGTGGAGCTATTGCTGGCATGGTAATTGGTTGTGTCTTTGGTCTTTTGCTGATTCTGGTTCTTTTGGTGTCCTTGTGTAGAAAAAGTGCCCAGAGTGTTGATGTTGAAAGTGGCACCGGTGATGGTGATGTGAGTAATGCAGATTCTGGTTCGGCTTGGATTTCAACTTCGGCCATTTTAGATGATTTGTTAAGAGCTTCTGAAAAGAGTTTGGTGTTTGGTGAGAATGTGAGTAGAAAGTTTAGTTTAGATGATTTGTTAAAAGGCCCTGCGGTAGATTTAGGAAAAGGGACATTTGGAAAATCTTATAAGGTAGCATTGGAGATGGGAGTGACTGTGGCTGTGAAAAGCTTGAAGGATGTTACTGCAAGTGAAAGAGAATTCAAGGAGAAAATAGTGGAGTTAGGAAAACTCTTTCATGAGAAACTGGTCCCACTTAGGTCTTATTATTATAAGAGAGATAAAAACCTTATTGTGTATGATTACATGCCAATGGGAAGCTTATCTACACTCTTGCATGGACGTAATGGAACTGCAAGGACTCCACTAAATTGGGAAACTAGGTCAACCATAGCCCTTGGTGCTGCACAAGGGATTGCATACCTACACTCACAAAGTCCAACATTTTGCCATGGAAACATCAGGTCATCAAACATCCTTCTCACAGAATGTTACGAGTCTCGTGTCTCCGACTTTGGCCTCGCATATCTTGCTCTTCCAAGTGCTGCACCCAATCGAGTTTCTGGTTACCGTGCGCCAGAGGTCACCGATACCCGTAGAGTATCCCAAAAGGCAGACGTTTACAGCTTTGGCATTATGCTTCTGGAGCTTATCACAGGTAAAGATCCTACTCGTTCTTTGCTGAATGAGGGAGTAGACCTACCAAGATGGGTCCAGTCGATCATTCAGGATGAGTGGAACACTCAGGTTTTCGACATGGAGCTTCTGTTGTGCCTACATGCGGAGGACGAAATGGTGAAACTTTTGCGGCTTGCTCTTAAATGGTCATCTAGAGAATCTCTTTCCAACGAAGTTCTTTCCAGGGATGCTTCAGAGACTTTGATTCTGGCGAATTTCGACGGGGGTGCAAACCTTGACTGTAGACCTATGCCTCATTTTGTCTTGTCCGAGGCAGAAATAGCGGTTGCTTATCAAAGGAAGGAACGTGTTGATCGCTTTGTCAAAACATATCGGGAAGTGACTGGTCAATGA 1254 0.433 MKNIFLLHFTVCLSGGAIAGMVIGCVFGLLLILVLLVSLCRKSAQSVDVESGTGDGDVSNADSGSAWISTSAILDDLLRASEKSLVFGENVSRKFSLDDLLKGPAVDLGKGTFGKSYKVALEMGVTVAVKSLKDVTASEREFKEKIVELGKLFHEKLVPLRSYYYKRDKNLIVYDYMPMGSLSTLLHGRNGTARTPLNWETRSTIALGAAQGIAYLHSQSPTFCHGNIRSSNILLTECYESRVSDFGLAYLALPSAAPNRVSGYRAPEVTDTRRVSQKADVYSFGIMLLELITGKDPTRSLLNEGVDLPRWVQSIIQDEWNTQVFDMELLLCLHAEDEMVKLLRLALKWSSRESLSNEVLSRDASETLILANFDGGANLDCRPMPHFVLSEAEIAVAYQRKERVDRFVKTYREVTGQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2909 417 ProSiteProfiles Protein kinase domain profile. 102 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2909 417 PANTHER INACTIVE RECEPTOR KINASE-RELATED 12 351 - -
Psa6g2909 417 Gene3D Transferase(Phosphotransferase) domain 1 177 364 - -
Psa6g2909 417 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Psa6g2909 417 PANTHER OS05G0588300 PROTEIN 12 351 - -
Psa6g2909 417 Pfam Protein tyrosine and serine/threonine kinase 107 304 IPR001245 GO:0004672|GO:0006468
Psa6g2909 417 Gene3D Phosphorylase Kinase; domain 1 79 176 - -
Psa6g2909 417 SUPERFAMILY Protein kinase-like (PK-like) 108 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2909 Psa-Chr6 240128922 240132407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2909 13 352 Receptor kinase-like Gene Family AT1G48480 53.186 5.87e-121 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa6g2909 PK_Tyr_Ser-Thr 1.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2909 - - aprc:113846223 436.417