Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2899 ATGGACGGTAAAGATGAACCACATTCATCACTTCCATGGCACTGGATAATTGAATCCCTAGCAGGTTTCAAAGAAACTCCCTTATCCACTCTACAAGGTTTGATTGATGCTGCACCTATTAGGCATGATGATTTTTGTGAAAATACAAAGGAATTGGTTGCTTTGAGGTGTTTGGAGGAACTTTATGCTCCGTTTTCTTCTTCAACATTGGATTCTTCAGTTGAACTTGATTCTTCACGATCTTGTGAAGATGTTCTTCGAGAAATATTGCATGAGGTGCCTTTATCAAATCTGAGGATTGCTGGAGGAAAGCTATTGAAATGGGATGTTAACCCATTTATTACAGACAAAAGAGCTGGGAATGTGAAATGTCACTTAGAGAAGCTGAAAGAATCAATATTGGAAGGTACACTGCCACTTACCGATCACTTAAAAGAGAGGAGTGGGTTATTTCAAACGAATCGGAATCGGCCTCATACAGTATGTGTGAATGATGGTAAATGCAATGATCATTCAGTGAAGGATGATGGGAACTCAACTTATGCAGAAGACATGGGAGCAAAAGAAAACTCAGTGTCCATAGTATTAGAGGATGGCAACAAATCTTCGAAAGAAGATTTACCTAATAATAAACGTTTATCCTCTAAGAGGAATAGGGTTTACTCGGCTGATAAGCATTTAATGAGTTGCTTTAATGAAAAGCAGGCTTGTATAAATGAGCGTGATGAACTCTTAACTACAAAAAAGATTAAACATTGGGCATCGACAAATTTTGATTCCAAGAAAGAAAAGCAAGTTTCTCGACTTGAAAAAGAAGTGTCAGAAAACTCGACTGAAAAAGTTCTAATTTCTGAGAGTGTAGGGCATCACACCGAAAAGAAAAACAGGGAAGCTAAAAGTGGTGGATCCTTAGAGCCTAGTTATAATAGGTGCTCTGCTTCAAATATGTGTCAGTCAAGTGGTCAAAATGAAGCCTTTCATGCTGAATCAGATATTGCCTATAAGGCAACTTTGACGCCTCAGCAGAAAACTTCTGGAGGTAAACCCCAGTCTGAACATGAACTAGATTTGCAACTTAAAGATTTAAATTGTTCCCAGCAGACAGCTAGTAGTGTTAAAGCTCAAGATGATACTGGTAATGGCTGTGGGATAGAGATACCAGGTGATACAGTTGTGTACCCAGGTGAAAAGATTAATCTCGTAATGAAAAAGCACAAAAAGAGAAGTCTTGATACAAAGTGTAGCGAAGGCGGTCGATTACCAGTTTGTGAAGCGGTTACTGGCCCACTATTGGTTCCTGAAAGTTGTATTGGCATGACGACTAATATTTATCCTCAGCATACATCCGGAGTTGATCCTAGCCATAATAAATATATAGATGAAACTAATTATACTGTACATGTTGAGCCCATTCCAACATATGATGGTAATGCAATTAAAATTCAGCATATAACCAATCAATCTCAAATCCAGCAGAAGGAGCCAAATGTTGCATCTTTAAATGTATCTCGGAAGCCAGTTGCTAATGACAAAGTTGTAGTTGATACTGTCAATGATTGTGTAGCAGAGTTATCAAATGATAGTGATGAGTATCACAACGAAAAGATTGATCTTGTAGCCAAAAAAGATGAATTCCTGAACTCCCAGCACACTTTTGCCAAAAAAGATGAATTCCTGAACTCCCAGCACACTTTTGGTCAAGATTTGCCAGCAAAGACTGAATCGACCAGACAAAATCTTTGCATGAAGTGCAATGAAGCTGGGCAATTACTGGTTTGTAAAACTACCACTTGCTCATTGATGGTGCATAAAAACTGCCTGGGTGCATCTGCTCAGTTGGATGCAAAGGGAAACTTCTTCTGCCCATTTTGTGCTTATTCTCACACTATTTCAGAATATCTTGAAGCCAAGAAAATAGCTTCATTGGCAAGGAAAGAATTAGCTATCTTCATTAGTAAGGGTATAAGAAAAGAAGCTGTAGAACATGTTTATGAATCAGGTAGACAGGAATGTATTTTTTCAAGAAAGAGTTATAAGTGCGAGCATACTCCATTAGCAGTGAATGAAGAAAATAGAGAAGATCATGCTGGTGAGCATGCAAATAAAGTTGGTAATTTTCCTTTTGAAAGAAGTCAGCAACAAGTTCCTATTTTAGTGGTTCACTCATCATCCTTCAGAGAAAAGGAAAATGTAAATAATGGGTTAGTAGGTGATGTAAGAGAAGAGGATGACTGTGAAATGCTGAATGCAAAGAGCTTAACTGATGAAAGAGTTGAAGACAGAGAAATGGGAACTGATAATGTAGGTGGACATGGCAATGAAATTTTTTCCAGTAAGAAGCTAAAGATTGTGTGTGCTAATGAAAGTAATGAAGAAGTTCTGCAGAATATGACAGAGCACAGTATGGATGGAACAGTAGAGCCAGTTTGGGCTCACAATACTGTAAGAGATGAAATTTCTAAAGATGAATGCAAGAAGCGTATTATTTCTAGATACTCCATGAGATTTCGTATGCATGAAGTTCAGAACAAAATCCAAGAAAGCCCTCAGATAAGACGGAAAAAAATCCCATGGACAGCTGAGGAGGAAGAGCTGATACAGGAGGGGGTCCAGAAGTTTGGTTTCAGCGACTCAAAACTGCCATGGAAGAAAATTTTGGCATTCGGTTCTCACTTGTTTGAGAAGAATGACAGACTTCGTACTCCACAGGACCTAAAGGATAAATGGAAAAACATGTGTAAAGCACACTCAAAATTGAAATAA 2763 0.3826 MDGKDEPHSSLPWHWIIESLAGFKETPLSTLQGLIDAAPIRHDDFCENTKELVALRCLEELYAPFSSSTLDSSVELDSSRSCEDVLREILHEVPLSNLRIAGGKLLKWDVNPFITDKRAGNVKCHLEKLKESILEGTLPLTDHLKERSGLFQTNRNRPHTVCVNDGKCNDHSVKDDGNSTYAEDMGAKENSVSIVLEDGNKSSKEDLPNNKRLSSKRNRVYSADKHLMSCFNEKQACINERDELLTTKKIKHWASTNFDSKKEKQVSRLEKEVSENSTEKVLISESVGHHTEKKNREAKSGGSLEPSYNRCSASNMCQSSGQNEAFHAESDIAYKATLTPQQKTSGGKPQSEHELDLQLKDLNCSQQTASSVKAQDDTGNGCGIEIPGDTVVYPGEKINLVMKKHKKRSLDTKCSEGGRLPVCEAVTGPLLVPESCIGMTTNIYPQHTSGVDPSHNKYIDETNYTVHVEPIPTYDGNAIKIQHITNQSQIQQKEPNVASLNVSRKPVANDKVVVDTVNDCVAELSNDSDEYHNEKIDLVAKKDEFLNSQHTFAKKDEFLNSQHTFGQDLPAKTESTRQNLCMKCNEAGQLLVCKTTTCSLMVHKNCLGASAQLDAKGNFFCPFCAYSHTISEYLEAKKIASLARKELAIFISKGIRKEAVEHVYESGRQECIFSRKSYKCEHTPLAVNEENREDHAGEHANKVGNFPFERSQQQVPILVVHSSSFREKENVNNGLVGDVREEDDCEMLNAKSLTDERVEDREMGTDNVGGHGNEIFSSKKLKIVCANESNEEVLQNMTEHSMDGTVEPVWAHNTVRDEISKDECKKRIISRYSMRFRMHEVQNKIQESPQIRRKKIPWTAEEEELIQEGVQKFGFSDSKLPWKKILAFGSHLFEKNDRLRTPQDLKDKWKNMCKAHSKLK* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2899 920 ProSiteProfiles Myb-like domain profile. 850 913 IPR001005 -
Psa6g2899 920 Gene3D - 847 916 - -
Psa6g2899 920 MobiDBLite consensus disorder prediction 198 217 - -
Psa6g2899 920 CDD SANT_TRF 856 914 - -
Psa6g2899 920 SMART PHD_3 580 625 IPR001965 -
Psa6g2899 920 ProSiteProfiles Zinc finger PHD-type profile. 578 627 IPR019787 -
Psa6g2899 920 MobiDBLite consensus disorder prediction 285 300 - -
Psa6g2899 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 633 IPR013083 -
Psa6g2899 920 SMART sant 854 915 IPR001005 -
Psa6g2899 920 MobiDBLite consensus disorder prediction 199 217 - -
Psa6g2899 920 ProSitePatterns Zinc finger PHD-type signature. 581 624 IPR019786 -
Psa6g2899 920 SUPERFAMILY Homeodomain-like 852 914 IPR009057 -
Psa6g2899 920 SUPERFAMILY FYVE/PHD zinc finger 574 628 IPR011011 -
Psa6g2899 920 MobiDBLite consensus disorder prediction 283 306 - -
Psa6g2899 920 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 442 - -
Psa6g2899 920 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 476 915 - -
Psa6g2899 920 Pfam Myb-like DNA-binding domain 857 911 IPR001005 -
Psa6g2899 920 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 442 - -
Psa6g2899 920 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 476 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2899 Psa-Chr6 238855530 238861926 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g2899 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2899 - - cam:101508857 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2899 6 238855530 238861926 Psa6g2899 6 238855530 238861926 ECH