Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2871 ATGAATTCCTTCCCAAACTCTTCCTCTTCATTTGAATTCAATTATCTTCCCTTCAACGAGAACGATCCCGAAGAGATGCTTCTCTACGGCATGATCAACGACGCGAACACCACTCTCAACAACCACACCAGAGTTATTAAGGAAGAAGAGGTAAGTTCCATAAGTTCCGAAGAGAACGAACCGAGGAAGGAGAAGTCATACCGAGGCGTTCGAAGAAGACCGTGGGGGAAATTCGCAGCAGAAATAAGGGATTCTACGAGAAACGGAATGAGGGTTTGGTTAGGAACTTTTGACAGTGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCTGCGTTTGCCATGAGAGGCGCTTCTGCTATACTCAATTTTCCGGTTGAGATTGTGAGAGAATCGCTTAATGATATGAATTGCGATGAATGTTCGGAAGATGGTTGTTCACCTGTTGTTGCTCTTAAGAGGAAACACTCTTTGAGAAGGAAAATCGGTTTCGTCAAGAACAAAGAACAAGATTTTAGAAAAAAAAACAACAATGATAGTAACAATATTAACCGTTTCGATAATGCTCTCGTGTTTGAAGATCTTGGTTCTGATTATTTAGAACAATTGTTGATGTCTTCCGATGAATTTCCTTCTCCTCAGTGA 642 0.4128 MNSFPNSSSSFEFNYLPFNENDPEEMLLYGMINDANTTLNNHTRVIKEEEVSSISSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFAMRGASAILNFPVEIVRESLNDMNCDECSEDGCSPVVALKRKHSLRRKIGFVKNKEQDFRKKNNNDSNNINRFDNALVFEDLGSDYLEQLLMSSDEFPSPQ* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2871 213 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Psa6g2871 213 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Psa6g2871 213 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
Psa6g2871 213 SUPERFAMILY DNA-binding domain 66 126 IPR016177 GO:0003677
Psa6g2871 213 PANTHER DNA-BINDING DOMAIN 13 205 IPR044808 GO:0003700|GO:0009873
Psa6g2871 213 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Psa6g2871 213 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Psa6g2871 213 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Psa6g2871 213 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Psa6g2871 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 13 205 - -
Psa6g2871 213 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2871 Psa-Chr6 234733054 234735530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2871 16 207 AP2-EREBP Transcription Factor Family AT3G23240 59.794 3.80e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g2871 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2871 K14516 - gmx:100790598 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1364 3 122620684 122621538 Psa6g2871 6 234733054 234735530 PCT