Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2857 ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACACTAAGAAGAAGATAAAGAAGAAATTGGATGAAGTGCAAGATATGCGTGATGCGATCAAAGCCAACCCAGGGAGATTAAAGAAGAATTCATCTGTGAATTCCAGAAGTTCCTCTAAAAATGGAGATTCTGAACACATTGCTGCACAAACGTTCCCTTTCCGTGAGTTAGCAGCTGCTACTAGAAATTTTAGAGCAGAATGTCTTTTGGGTGAGGGAGGCTTTGGCAGAGTGTATAAAGGGCATTTGGAATCTGTTAATCAGACCGTTGCAATTAAGCAACTTGATCGAAATGGGCTACAGGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGGCATTAGGATCCTTGGAAGACCACTTACATGATGTTTCTCTCGGCAAGAAACGACTTGACTGGAACACGAGAATGAAAATAGCTGCCGGCGCAGCAAAAGGCTTGGAATATCTACATGATAAAGCTAACCCTCCCGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCTAAGTTATCCGATTTTGGTTTGGCTAAAGTCGGCCCTGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCGGAGTATGCAATGACGGGTCAACTCACTCTGAAATCAGATGTTTATAGTTTCGGCGTTGTTCTTCTAGAAATAATTACCGGAAGGAAAGCGATCGACAATTCAAAATGTGCCGCAGAGCAGAATCTTGTTGCATGGGCTAGACCTTTGTTTAAAGATCGAAGAAAATTCACGCAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCGAGAGGGATATACCAAGCGCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCGAATATGCGTCCAGTTATAGCCGATGTTGTGACAGCTTTGAGCTACCTTGCTTCCCAAAACTTTCAGCCGAATACGCAGACGGTACAAAGCTCTCGCCTCGGTTCTGGTACTCCTCCTCGAAGCAGGAGGGGAGTTTGA 1143 0.4383 MGWIPCSGSSNTKKKIKKKLDEVQDMRDAIKANPGRLKKNSSVNSRSSSKNGDSEHIAAQTFPFRELAAATRNFRAECLLGEGGFGRVYKGHLESVNQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMALGSLEDHLHDVSLGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGIYQALAVAAMCVQEQANMRPVIADVVTALSYLASQNFQPNTQTVQSSRLGSGTPPRSRRGV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2857 380 MobiDBLite consensus disorder prediction 37 55 - -
Psa6g2857 380 MobiDBLite consensus disorder prediction 25 55 - -
Psa6g2857 380 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2857 380 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672|GO:0006468
Psa6g2857 380 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2857 380 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Psa6g2857 380 SUPERFAMILY Protein kinase-like (PK-like) 57 346 IPR011009 -
Psa6g2857 380 Coils Coil 13 33 - -
Psa6g2857 380 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Psa6g2857 380 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Psa6g2857 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Psa6g2857 380 PANTHER OS07G0668900 PROTEIN 1 378 - -
Psa6g2857 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 378 - -
Psa6g2857 380 CDD STKc_IRAK 80 348 - -
Psa6g2857 380 MobiDBLite consensus disorder prediction 361 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2857 Psa-Chr6 233705291 233709419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2857 27 353 Glycoside Hydrolase AT3G07070 66.364 2.30e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Psa6g2857 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2857 - - gmx:100776041 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2857 6 233705291 233709419 Psa6g2857 6 233705291 233709419 ECH
Psa6g2857 6 233705291 233709419 Psa5g6461 5 546876587 546878675 ECH