Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2856 ATGACAAGGGGTAACCAGATATGTGTTGATGGTGACAGTAAAGAACTTACTCAGAGTTTGCGGGATGGGAAGAACAACTTAAAAACAGGAGTTGTTGGCGAGGATGATGAAGTGAAATGTAATGGAGTAGCGGAAGAAGTTAAGGTTGGAGAGGGAGGGAATGGGGAATCCTCTTCTGTCCAGCAGCAAGTACCGCAGTATCAGTCTCAAGGGGCAATTATTTGCTGGGAGAGGTTTCTACATATTAGATCCCTTAAAGTCTTGCTTGTGGAGTATGATGACTGTACCCGCCATATTGTTACTGCATTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATTTTGGAGGATTTAACCAATCATATTGATATTGTTTTAACTGAGGTGGCAATGCCTGGCTTATCAGGCATTGCTCTTCTATACAAGATTATGGACCACACAACACGGAAAAATATTCCAGTAATTATGATGTCATCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGATTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAATCTGTGAAATCAAAGAGTCTTGAGAAGTTTGATAATAATTCAGGAAGCAATGACGAGCAAGATAATGGAAGTTTAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCCTGGACCAAACGAGCTGTAGAGGTTGACAGTCCTAAATCTGGCTCTCAGTGGGATCAGATAGCTGAGTGTCCCGACAGCACTTGTGCTCAAGTTGTTCATTCCAATGCTGAAATATGCAGGGGCAAGGTGGTTCCTCCGGTCATAAAGGAGTGTCCAGAGCAAAAGGAACAAATAGGCCCCTCTAAATTCAATGATCAAATTAATAGAGGACAGCAGGAGCTTAATTGTGAGAATCAATCGGGCAAGCTAAGATGCAAAGGGCTTTCATTATCGGATGGTGTTACTAGCACTTCTGGTTCTCAAATGCGAAGTGGAGAAACTGAAGCTTTAAATAGAATACCCAAGTCCTCAGATATTTACAACAAAGGTACTAATAATGATGAGGAGTTGCCATCTCTTGAGCTCAGTTTAAAGAGGCCTAGAGAAGTTAAAGAAGCTGGTACTACAAGTCAGGATGAACGGAATGTTTTAAGACGTTCTGATTTGTCTGCTTTCTCAAAGTACAATGCAGCTCTTAATGCTAAGAAGTCTCCTACCGGATGTGTTGGAAGCAACTCCTCTCCACATAATAACAGCTTAGAAGTTACAAAGAAAGATTCGTCTCTTGATGTTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGCGGTAGCAATAACATTGATATGGGTTCCACAACTAATAATGCTTTTACCAAGTCTGCAGTTATAAGTGAGCCAGCAGTGGCATCAACAACCAAATTTGTGTACAAAACATCTGCTTTCCAGCCCATAAAAAGCAGCCTCATGCGTACCTCTCAACAGGTCGTCTTGCATAATAATGAATATACGACAATAGCAATGCTGGCACCACCTAAAATTGACACTAATAAGGGTTCTGCTACTCAGGATTTCCATTACCATTATGAAAACCACAACAATGTTACTAACATGCAGCATCAGTTGCCGCCTGAGAATGATGCTGAATCTTTAAAAAAAATGACTGCTGTTGCTCCACACTGCGGCGGGTCATCAAATGTGGTTGAAGTGCTAGTTGAAGGTAATATGGGAAATTACAGTATCAATAGAAGTGCTTCAGGCAGCAACATTGAAAGTAATGGACAAAATGGGAGCAGCACTGCAATAAATGCTGGAGGGACAAACATAGAAAGCAACAATGGACTCGCTGGGAATAGTGGTAGTGGTGATGCTAGTGGGAATGGAAGTGCCAACAGAGTAGATCAAAACAAGAATTCTCAAAGGGAAGCAGCCCTAACTAAATTTCGCCAAAAAAGAAAAGAGAGAAAAGAGAAGTGCTTTCATAAACAGGTTCGATATCAGAGCAGGAAGAAGTTAGCCGAACAACGACCGCGGTACCGTGGACAATTTGTGCGACAGTCTTCAAACAATAATGCAAGTGAGGCAACAGATAGTTAA 2220 0.4171 MTRGNQICVDGDSKELTQSLRDGKNNLKTGVVGEDDEVKCNGVAEEVKVGEGGNGESSSVQQQVPQYQSQGAIICWERFLHIRSLKVLLVEYDDCTRHIVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDIVLTEVAMPGLSGIALLYKIMDHTTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKFDNNSGSNDEQDNGSLGLNNGDGSDNGSGTQSSWTKRAVEVDSPKSGSQWDQIAECPDSTCAQVVHSNAEICRGKVVPPVIKECPEQKEQIGPSKFNDQINRGQQELNCENQSGKLRCKGLSLSDGVTSTSGSQMRSGETEALNRIPKSSDIYNKGTNNDEELPSLELSLKRPREVKEAGTTSQDERNVLRRSDLSAFSKYNAALNAKKSPTGCVGSNSSPHNNSLEVTKKDSSLDVQSHSSGNPPNQNSNGGSNNIDMGSTTNNAFTKSAVISEPAVASTTKFVYKTSAFQPIKSSLMRTSQQVVLHNNEYTTIAMLAPPKIDTNKGSATQDFHYHYENHNNVTNMQHQLPPENDAESLKKMTAVAPHCGGSSNVVEVLVEGNMGNYSINRSASGSNIESNGQNGSSTAINAGGTNIESNNGLAGNSGSGDASGNGSANRVDQNKNSQREAALTKFRQKRKERKEKCFHKQVRYQSRKKLAEQRPRYRGQFVRQSSNNNASEATDS* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2856 739 MobiDBLite consensus disorder prediction 239 271 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 359 376 - -
Psa6g2856 739 Pfam Response regulator receiver domain 87 198 IPR001789 GO:0000160
Psa6g2856 739 SUPERFAMILY CheY-like 83 209 IPR011006 -
Psa6g2856 739 MobiDBLite consensus disorder prediction 359 423 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 210 283 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 660 684 - -
Psa6g2856 739 PANTHER TWO-COMPONENT RESPONSE REGULATOR 312 716 IPR045279 GO:0009736
Psa6g2856 739 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 315 IPR045279 GO:0009736
Psa6g2856 739 MobiDBLite consensus disorder prediction 397 423 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 722 739 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 210 226 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 443 485 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 382 396 - -
Psa6g2856 739 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 315 - -
Psa6g2856 739 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 312 716 - -
Psa6g2856 739 Gene3D - 84 244 - -
Psa6g2856 739 Pfam CCT motif 682 727 IPR010402 GO:0005515
Psa6g2856 739 ProSiteProfiles CCT domain profile. 685 727 IPR010402 GO:0005515
Psa6g2856 739 MobiDBLite consensus disorder prediction 660 739 - -
Psa6g2856 739 MobiDBLite consensus disorder prediction 692 707 - -
Psa6g2856 739 CDD psREC_PRR 87 190 - -
Psa6g2856 739 SMART REC_2 85 200 IPR001789 GO:0000160
Psa6g2856 739 ProSiteProfiles Response regulatory domain profile. 86 204 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2856 Psa-Chr6 233659887 233675414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2856 161 729 Response Regulator Gene Family AT5G02810 46.326 7.52e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Psa6g2856 Response_reg 5.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2856 K12129 - gmx:100796933 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2856 6 233659887 233675414 Psa6g2856 6 233659887 233675414 ECH
Psa6g2856 6 233659887 233675414 Psa7g5073 7 445763618 445769891 ECH