Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2847 ATGAATTCTAGTGAAGAAGGTGATGATGATCATGATCAAGGAAAAAAACGTTCTTATGAATGTACATATTGCAAAAGAGGTTTCACAAATGCTCAAGCTTTAGGTGGTCACATGAATATTCATAGGAAAGACAGAGCAAAAAGTAACAAAAAACCACAAATTTCAAACAAATTCTTCACCAATGATGAAACTACTTCTGTGGCTTTTCCTTTTGTTTCAGCAAATTCTTCACCTATGAGGCAAATGCAACAATATTTACCAACAACGACAACAAATTATCTTGTTGAAAATTACCAACCTTCAAATGTGCATGGTTTTGGATATGATCATCCAAGATCTTCTTCATCCAATTGGTCTAACTTTCATTTTAATCAAGAGCTTCAGGGTCCTAATTTGAGTCTTCAAATTGGTCCAAGTCATGATCAAATAATTAGGAGAGGAAATCAAGAAGAAAATGAAGTTGATTTGGAGCTGAGGCTTGGACATGATCCATGA 495 0.3434 MNSSEEGDDDHDQGKKRSYECTYCKRGFTNAQALGGHMNIHRKDRAKSNKKPQISNKFFTNDETTSVAFPFVSANSSPMRQMQQYLPTTTTNYLVENYQPSNVHGFGYDHPRSSSSNWSNFHFNQELQGPNLSLQIGPSHDQIIRRGNQEENEVDLELRLGHDP* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2847 164 PANTHER OS07G0101800 PROTEIN 4 164 - -
Psa6g2847 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Psa6g2847 164 Pfam C2H2-type zinc finger 19 43 - -
Psa6g2847 164 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Psa6g2847 164 Gene3D Classic Zinc Finger 6 76 - -
Psa6g2847 164 SUPERFAMILY beta-beta-alpha zinc fingers 16 45 IPR036236 -
Psa6g2847 164 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 164 - -
Psa6g2847 164 SMART c2h2final6 19 41 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2847 Psa-Chr6 233408507 233409425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2847 19 161 C2H2 Transcription Factor Family AT5G43540 34.266 4.41e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g2847 zf-C2H2_6 8.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2847 - - cam:101503281 162.155