Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2830 ATGTGCAGGATCGGTGCCGACTACAACGCTCAATTGTACTGGTTTGAGGCAGCTCCGCATAAACAATTAGACAGCTTCCGAAAGCAGTTTCGGTTGAGGTTGGTTCCACTTCATCGACTGAAATACGACTGGCTTCTATCCGATGCTGCACTTCTAAAGCCTTTTACTGAAGAACTATGTATGAAAGCTTGTATGGAAGATTGCTTGTGTTCTGTGGCTATTTTAAGGTTGGGTAATAGTTGCTGGAAAAAGAAGTTACCACTCTCAAATGGGAGAGTTGATACCACACTTGAAGGTGCCAAGGCCTTCTTGAAATACAAGAAGAAGCTTAGAAGTATCATCAAAAGTGACACTTATGTTGAAACCAATTTACGTTGCTTCACTTTCGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAAGGGAGCTTTTGGTATTGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCCCATCGAGAATTCAGGAATGAACTGAATGTTATTGGTCTCACTCATCACAAGAACTTGGTTCGTTTACTTGGATTTTGTGAGGGTGGATCTGGAATAGTAACTGCATCTTGTGATGAATTTTTTGCGTGCCCTTGTGTTGTTGGGAGATGA 687 0.4119 MCRIGADYNAQLYWFEAAPHKQLDSFRKQFRLRLVPLHRLKYDWLLSDAALLKPFTEELCMKACMEDCLCSVAILRLGNSCWKKKLPLSNGRVDTTLEGAKAFLKYKKKLRSIIKSDTYVETNLRCFTFEELEEATNGFDKELGKGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSGIVTASCDEFFACPCVVGR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2830 228 SUPERFAMILY Protein kinase-like (PK-like) 118 207 IPR011009 -
Psa6g2830 228 Gene3D Phosphorylase Kinase; domain 1 111 212 - -
Psa6g2830 228 Pfam Protein tyrosine and serine/threonine kinase 139 212 IPR001245 GO:0004672|GO:0006468
Psa6g2830 228 ProSitePatterns Protein kinases ATP-binding region signature. 143 170 IPR017441 GO:0005524
Psa6g2830 228 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 106 208 - -
Psa6g2830 228 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 108 - -
Psa6g2830 228 ProSiteProfiles Protein kinase domain profile. 137 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2830 228 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 41 108 - -
Psa6g2830 228 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 106 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2830 Psa-Chr6 229739128 229741533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2830 109 211 Receptor kinase-like Gene Family AT3G21340 40.777 1.96e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Psa6g2830 PK_Tyr_Ser-Thr 2.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2830 - - mtr:MTR_8g011410 241.121