Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2823 ATGAGATCCCCAGTAGACCGTGTGTCTAAGAGCTCTTCGTTGAGAAGTCTTTGTAAATTTCTATCCCTCTTGCTAAGGAGCCGTTGCTACCTAGAGATCATTTCTCCGTTGAGAAGTCTTTGGAAATTTCTATCCCTCGCGATTAGGAGTCGTTGCTACCTCGAGGTCGTTTCTCCGTTGAGAAGTCTTTGGAAATTTCTATCCCTCTTGATTAGGAGCCGTTGCTACCTAGAGGTCCTTTCTCCGTTGAGAAGTCTTTGGAAATTGCATTCTCTCTTGCTAAGGAGCCGTTGCTACCTGTTGCACGAGGAGGTTGTTTCTCCGTTGAGAAAAATTCTCGTCCCTCTTGCTAAGGAGCCGTTGTTACCTATTGCACAAGGAGGTTATTTCTCAATTGAGTTGTCCATCCCTTTTTTGCAAGACGTCTCTCTGCCTATAGCAGAAGATCTTGTTCCTATTCTTTTTGTTTGGCAGCACCACCACCAACATCAGGATCTTAAGAGCATTATTGGCTTTCAAGCTCTTTCAAACAACTCAGGTTCTGAAGTTGATGATTCAGGTTCAATAGGAAAATCACAAGCTGCATGTAACGAGTTTGGAACTCATTGTGTTGAGTCAGGTAACGAGTTTACTTACTCCACCGCCGCCGCCACCGCTAGTGGTGCTTTGTCCCTCGGTGTTGCTCAGAACTCCGAAGAAACTGCTATCGTTGTTGCTGATTCAGATAGCTCCAAGAAAATCGTTGATACTTTTGGTCAGAGAACTTCGATTTACCATGGTAATTATTGGGGTCCTACTGCTACTACCAACTTCCCTGTTTCTAGTTATGCAAAGGAATTGGAAGAGATGAAAGTCGTAACAAAGCAAGAATCCATTGCGTCATTGCGAAGGAAGACTAGTGGCTTTTTAAGAGGAGCTTCCATCTATATGGGTGTTACTAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATCGTTCGTGTTACCGGAAACAAGGACTTGTACTTGGGAGCATTCCCAACTGAAGAAGAGGCAGCTGAAGCATACGACATTGCAACAATCAAATTCCGAGGTGCAAATGTTGTAACAAACTTTGAGATGAACATATATGATGTGGAAGCTATCATGAAGAGTTATTTTCCTGTTGGCGGGGCAGCAAAATGCTTAAAGCGGTCTCTGGAATCAGAACATAAAGTTGCTGTCATTAACAACATTCAGCAGAACAACCCTCAGTAG 1236 0.4377 MRSPVDRVSKSSSLRSLCKFLSLLLRSRCYLEIISPLRSLWKFLSLAIRSRCYLEVVSPLRSLWKFLSLLIRSRCYLEVLSPLRSLWKLHSLLLRSRCYLLHEEVVSPLRKILVPLAKEPLLPIAQGGYFSIELSIPFLQDVSLPIAEDLVPILFVWQHHHQHQDLKSIIGFQALSNNSGSEVDDSGSIGKSQAACNEFGTHCVESGNEFTYSTAAATASGALSLGVAQNSEETAIVVADSDSSKKIVDTFGQRTSIYHGNYWGPTATTNFPVSSYAKELEEMKVVTKQESIASLRRKTSGFLRGASIYMGVTRHHQQGRWQARIVRVTGNKDLYLGAFPTEEEAAEAYDIATIKFRGANVVTNFEMNIYDVEAIMKSYFPVGGAAKCLKRSLESEHKVAVINNIQQNNPQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2823 411 SUPERFAMILY DNA-binding domain 307 368 IPR016177 GO:0003677
Psa6g2823 411 CDD AP2 307 366 IPR001471 GO:0003700|GO:0006355
Psa6g2823 411 SMART rav1_2 308 372 IPR001471 GO:0003700|GO:0006355
Psa6g2823 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 156 260 - -
Psa6g2823 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 262 408 - -
Psa6g2823 411 Gene3D AP2/ERF domain 308 368 IPR036955 GO:0003700|GO:0006355
Psa6g2823 411 Coils Coil 402 411 - -
Psa6g2823 411 ProSiteProfiles AP2/ERF domain profile. 308 366 IPR001471 GO:0003700|GO:0006355
Psa6g2823 411 Pfam AP2 domain 308 358 IPR001471 GO:0003700|GO:0006355
Psa6g2823 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 156 260 - -
Psa6g2823 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 262 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2823 Psa-Chr6 229595786 229599144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2823 158 395 AP2-EREBP Transcription Factor Family AT5G10510 48.955 1.66e-74 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g2823 AP2 7.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2823 K09285 - gmx:100775390 327.405