Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g2796 | ATGGCGCAACAACACAACAAGCTTCTTCCTTGCAAATCTGATGGCATTTGTATGATCTGCAACCATAAGCCTCTAGAAAGTGAAATCGTGAGTTGCAGAACTTGTGCAACACCATGGCATATTCCATGTTTACCTCTTCGTCCCCTGAAAATCTTCGATTGGAATTGCACTGATTGTTCTCAACCTGTGGATGTCAACCACGTCGCCGATGCATCTGCTCCTCCTATCACTTGTGGTCTTGTTTCCACCATCTACGCCAACGAGAATGACACTTCACTCACTGGTGAAGAAAGGGCCAAGAAAAGTCATGAAGACTATGATGGATCTCCTAAACCACCTTTTGAAAACAACAACAAATATAATGACTTGTATGGCATTTTCTATAGTAAGCTTAACTGCACTTTCTGTTTCTGCTTGCACTTGCCTGAGAGACCTATCATTACACTATGCGGGCACAATTTTTGCATGAAGTGTTTTGAGAAATGGATTAAGCAAGGAAAAAACAATTGCCCAAATTGTAGGGCTGAAATTCCAGCAAATATGGCGAGTGATCCACAAATCAATGCAAAACTTGAGACCACCATTCAAATGGCTATATCAGAGAGTGTTGCTCATGGGAAGATATTTGTGATGATTTCAAAAGATCATTTTGGACCCATTGTTGCTGAGAATGATCCAATAAGAAAACGGGGAGTTCTTGCTGGTGATACATGGGAGGGTTTGATGGAATGTATCCAATGGGGTGCTCATTTTCCCCATGATTCCAGGATTTCTAGTCAGAGTGTTTATGGTGCTCAATCTGTTGCTCTATCTGGTGGTTACATTGATGAGATAGATCATG | 841 | 0.415 | MAQQHNKLLPCKSDGICMICNHKPLESEIVSCRTCATPWHIPCLPLRPLKIFDWNCTDCSQPVDVNHVADASAPPITCGLVSTIYANENDTSLTGEERAKKSHEDYDGSPKPPFENNNKYNDLYGIFYSKLNCTFCFCLHLPERPIITLCGHNFCMKCFEKWIKQGKNNCPNCRAEIPANMASDPQINAKLETTIQMAISESVAHGKIFVMISKDHFGPIVAENDPIRKRGVLAGDTWEGLMECIQWGAHFPHDSRISSQSVYGAQSVALSGGYIDEIDH | 280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g2796 | 280 | ProSiteProfiles | Zinc finger PHD-type profile. | 14 | 62 | IPR019787 | - | |
| Psa6g2796 | 280 | Pfam | Ring finger domain | 132 | 174 | IPR001841 | - | |
| Psa6g2796 | 280 | SMART | ring_2 | 133 | 173 | IPR001841 | - | |
| Psa6g2796 | 280 | ProSiteProfiles | Zinc finger RING-type profile. | 133 | 174 | IPR001841 | - | |
| Psa6g2796 | 280 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 201 | IPR013083 | - | |
| Psa6g2796 | 280 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 204 | 280 | - | - | |
| Psa6g2796 | 280 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 7 | 198 | - | - | |
| Psa6g2796 | 280 | SUPERFAMILY | FYVE/PHD zinc finger | 11 | 62 | IPR011011 | - | |
| Psa6g2796 | 280 | Pfam | SAD/SRA domain | 230 | 279 | IPR003105 | - | |
| Psa6g2796 | 280 | ProSitePatterns | Zinc finger PHD-type signature. | 17 | 59 | IPR019786 | - | |
| Psa6g2796 | 280 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 73 | IPR013083 | - | |
| Psa6g2796 | 280 | SMART | PHD_3 | 16 | 60 | IPR001965 | - | |
| Psa6g2796 | 280 | CDD | RING-HC | 138 | 173 | - | - | |
| Psa6g2796 | 280 | SUPERFAMILY | RING/U-box | 127 | 180 | - | - | |
| Psa6g2796 | 280 | ProSiteProfiles | YDG domain profile. | 227 | 280 | IPR003105 | - | |
| Psa6g2796 | 280 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 204 | 280 | IPR045134 | - | |
| Psa6g2796 | 280 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 7 | 198 | IPR045134 | - | |
| Psa6g2796 | 280 | SUPERFAMILY | PUA domain-like | 204 | 280 | IPR015947 | - | |
| Psa6g2796 | 280 | Gene3D | - | 202 | 280 | IPR036987 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g2796 | Psa-Chr6 | 225614520 | 225615618 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g2796 | 9 | 280 | C2H2 Transcription Factor Family | AT5G39550 | 41.720 | 3.67e-70 | 226 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g2796 | K10638 | - | gmx:100786796 | 284.263 |