Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2795 ATGGCGCAACAACACAACAAGCTACTTCCTTGCAAATCTGATGGCATTTGTATGATCTACAACCATAAGCCTCTAGAAAGTGAAATTGTGAGTTGCAGAACTTGTGCAACACCATGGCATGTTCCATGTTTACCTTTCCATCCCCTGAAAATCTTTGATTGGAATTGCACTGCTTGTTCTCAACCTGTGGATGTCAACCACGTCGCCGATGCATCTGCTCCTCCTATCACTTGTAGTCTTGTTTCCACCATCTACGCCAACGAGAATGATACTTCACTCACTGGTGAAGAAAGGTCCAAGAAAAGTCATGAAGTCTATGATAGATCTCCTAAACCACCTTTTGAAAACAACAACAAATATAATGACTTGTATGGCATTTTCTATAGTAAGCTTAACTGCACTTTCTGCTTGCACTTGCCTGAGAGACCTATCACTACACTATGCGGGCACAATTTTTGCATGAAGTGTTTTGAGAAATGGATTAAGCAAGGAAAAAACAATTGCCCAAATTGTAGGGCTGAAATTCCAGCAAATATGGCGAGTGATCCACAAATCAATGCACAACTAGAGACCACCATTCAAATGGCTATATCAGAGAGTGTTGCTCATGGGAAGATATTTTTGACGATTTCAAAAGAACATTTTAGACCCATTGTTGCTGAGAATGATCCAATAAGAAAATGGGGAGTTCTTGTTGGTGATACATGGGAGGGTTTGATGGAATGTATCCAATGGGGTGCTCATTTTCCCCATGATTCCAGGATTGCTAGTCAGAGTGTTTATGGTGCTCAATCTGTTGCTCTATCTGGTGGTTACATTGATGAGATAGATCATGGTAATTGGTTTCTTTATAGTGGAAGTTGTGGAAATGACCTTAGTGATAACAAACGTACCAACAAAAATCAGTGCTTTGATAAAAAATCTGAGAGAAAGAATGAAGCTTTGAGACTCAGTTGCGAAAAAGGTTATCCTGTTCGTGTTGTAAGATCCCACACGAAGAAACGCTCCTCTTATGCACCCAAAGCAGGAGTGCGATACGATGGGGTTTATAGAATTGAAAAATGGTGGCGCAAAATTGGAAAGCAAGTATGGTTCTTGTTTGTAATATTTATCCATTCCATTTATGCATGCAAGGTTTGTAGATATTTGTTTGTGAGGTGTGACAATGAGCCTGCTCCATGGACAAGTGAATTATCCGAAGATCGTCCCTATCCACTACCTATAATTGAGGAGTTGAACAATTCAATTGATATTACTGAAAGGAAGGGTGATCCATCGTGGGGCTTTGATGAGGAAAAAGGTTGCTGGCTATGGAAGAAGCCTCCACCGCCAAGTAAGAAACTAGTGAATGTGAATCCTATCGATGAAACAAAAATAAAAGTTGATGTGGCAAAAGCAAGAAAGGTGGCCTCAAAAATCAAGGATAAGCTTTTGAAAGAGTTTGGTTGCAATATCTGCCACAAGGTGTTGGCTTCCCCTCTTACTACACCATGTGCTCACAACTTTTGCAAAGTCTGCTTGGAATGTGTGTTTTCAAGCCAAAGTTATATAAGGGAGAGGGTCACTCAAAGTGGACTTGCTTTGCGGCCAAAGAAAAACATCATGAAATGTCCTACATGTTCGACTGACATCGTGGATTACCTTGAGATTTTAAAGATAATGCTGACCTCTTTTAAAATAAATGGTTTATCTTGA 1695 0.4006 MAQQHNKLLPCKSDGICMIYNHKPLESEIVSCRTCATPWHVPCLPFHPLKIFDWNCTACSQPVDVNHVADASAPPITCSLVSTIYANENDTSLTGEERSKKSHEVYDRSPKPPFENNNKYNDLYGIFYSKLNCTFCLHLPERPITTLCGHNFCMKCFEKWIKQGKNNCPNCRAEIPANMASDPQINAQLETTIQMAISESVAHGKIFLTISKEHFRPIVAENDPIRKWGVLVGDTWEGLMECIQWGAHFPHDSRIASQSVYGAQSVALSGGYIDEIDHGNWFLYSGSCGNDLSDNKRTNKNQCFDKKSERKNEALRLSCEKGYPVRVVRSHTKKRSSYAPKAGVRYDGVYRIEKWWRKIGKQVWFLFVIFIHSIYACKVCRYLFVRCDNEPAPWTSELSEDRPYPLPIIEELNNSIDITERKGDPSWGFDEEKGCWLWKKPPPPSKKLVNVNPIDETKIKVDVAKARKVASKIKDKLLKEFGCNICHKVLASPLTTPCAHNFCKVCLECVFSSQSYIRERVTQSGLALRPKKNIMKCPTCSTDIVDYLEILKIMLTSFKINGLS* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2795 564 SUPERFAMILY RING/U-box 125 194 - -
Psa6g2795 564 Pfam SAD/SRA domain 229 389 IPR003105 -
Psa6g2795 564 Pfam Zinc finger, C3HC4 type (RING finger) 483 540 IPR018957 GO:0046872
Psa6g2795 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 201 IPR013083 -
Psa6g2795 564 MobiDBLite consensus disorder prediction 91 111 - -
Psa6g2795 564 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 7 196 IPR045134 -
Psa6g2795 564 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 202 549 IPR045134 -
Psa6g2795 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 446 559 IPR013083 -
Psa6g2795 564 ProSiteProfiles Zinc finger RING-type profile. 483 541 IPR001841 -
Psa6g2795 564 MobiDBLite consensus disorder prediction 93 110 - -
Psa6g2795 564 SUPERFAMILY RING/U-box 471 549 - -
Psa6g2795 564 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 7 196 - -
Psa6g2795 564 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 202 549 - -
Psa6g2795 564 ProSitePatterns Zinc finger RING-type signature. 498 507 IPR017907 -
Psa6g2795 564 SMART G9a_1 220 390 IPR003105 -
Psa6g2795 564 Gene3D - 210 402 IPR036987 -
Psa6g2795 564 Pfam Zinc finger, C3HC4 type (RING finger) 130 175 - -
Psa6g2795 564 ProSiteProfiles YDG domain profile. 225 376 IPR003105 -
Psa6g2795 564 ProSiteProfiles Zinc finger RING-type profile. 133 172 IPR001841 -
Psa6g2795 564 SMART ring_2 133 171 IPR001841 -
Psa6g2795 564 SMART ring_2 483 540 IPR001841 -
Psa6g2795 564 SMART PHD_3 16 60 IPR001965 -
Psa6g2795 564 CDD RING-HC 133 171 - -
Psa6g2795 564 SUPERFAMILY PUA domain-like 229 404 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2795 Psa-Chr6 225550153 225553121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2795 9 549 C2H2 Transcription Factor Family AT5G39550 46.827 2.98e-172 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2795 K10638 - gmx:100786796 634.409