Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2794 GCGCAACGACACAACAAGCTACTTCCTTACAAATCTGATGGCATTTGTATGATCTGCAACCATAAGCCTCTAGAAAGTGAAATTGTGAGTTGCAAAACTTGTGCAACACCATGGCTTGTTCCATGTTTACCTCTCCGTCCCCTGAAAATCTTCGATTGGAATTACACTGATTGTTCTCAACCTGTGGATGTCAACCACGTCGTCGATGCATCTGCTCCTCCTATCACTTGTAGTCTTGTTTCCACCATCTACGCCAACGAGAATGGTACTTCACTCACTGGTGAAGAAAGGGCCAAGAAAAGTCATGAAGTCTATGATGGATCTCCTAAACCACCTTTTGAAAACAACAAAAAATATAATGACTTGTATGGCATTTTCTATACAAATATGGCGAGTGGTCCACAAATCAATGCACAACTGGAGACCACCATTCAAATGGCTATATCAGAGAGTGTTGCTCATGGGAAGATATTTGTGACGATTTCAAAAGATCATTTTGGACCCATTGTTGCTGAGAATGATCCAATAAGAAAACGGGGAGTTCTTGTTGGTGATACATGGGAGGGTTTGATGGAATGTATCCAATGGGGTGCTCATTTTCCCCATGATTCCAGGATTGCTAGTCAGAGTGTTTATGGTGCTCAATCCGTTGCTCTATCTGGTGGTTACATTGATGAGATAGATCATGGTAATTGGTTTCTTTATAGTGGAAGTTGTGGAAATGACCTTAGTGGTAACAAACGTACCAACAAAAATCAGTCATTTGATAAAAATTCTGAGAGAAAGAATGAAGATTTGAGACTCAGTTGCGAAAAAGGTTATCCTGTTCGTGTTGTAAGGTCCCACACGAAGAAACGCTCCTCTTATGCACCCAAATCAGGAGTGCGATACGATGGGGTTTATAGAATTGAAAAATGGTGGCGCAAAATTAGAAAGCAAGGTCACAAGGTTTGTAGATATTTGTTTGTGAGGTGTGACAATGAGCCTGCTCCATGGACAAGAAGTGAATTATCCGAAGATCGTCCCTATCCACTACCTATTATTGAAAGGAAGGGTGATCCATCATGGGGCTTTGATAAGCCTCCACCGCCAAGTAAGAAACTAGTGAATGTGAATCCTATCGATGAAACAAAAATAAAAGTTGATGTGGAAAAAGCAAGAAAGGTGTCCTCAAAAATCAAGGATAAGCTTTTGAAAGAGTTTGGTTGCAATATCTGCCACAAGGTGTTGGCTTCCCCTCTTACTACACCATGTGCTCACAACTTTTGCAAAGTCTGCTTGGAATGTGTGTTTTCAAGCCAAAGTTATATAAGGGAGAGGGTCACTCAAAGTGGATTTGCTTTGCGGCCCAAGAAAAACACCATGAAATATCCTACATGTTCGACTGACATCGTGGATTACCTTAAGATTTTAAAGGTAATGCTGTACCTCTTTTAA 1437 0.4085 AQRHNKLLPYKSDGICMICNHKPLESEIVSCKTCATPWLVPCLPLRPLKIFDWNYTDCSQPVDVNHVVDASAPPITCSLVSTIYANENGTSLTGEERAKKSHEVYDGSPKPPFENNKKYNDLYGIFYTNMASGPQINAQLETTIQMAISESVAHGKIFVTISKDHFGPIVAENDPIRKRGVLVGDTWEGLMECIQWGAHFPHDSRIASQSVYGAQSVALSGGYIDEIDHGNWFLYSGSCGNDLSGNKRTNKNQSFDKNSERKNEDLRLSCEKGYPVRVVRSHTKKRSSYAPKSGVRYDGVYRIEKWWRKIRKQGHKVCRYLFVRCDNEPAPWTRSELSEDRPYPLPIIERKGDPSWGFDKPPPPSKKLVNVNPIDETKIKVDVEKARKVSSKIKDKLLKEFGCNICHKVLASPLTTPCAHNFCKVCLECVFSSQSYIRERVTQSGFALRPKKNTMKYPTCSTDIVDYLKILKVMLYLF* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2794 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 474 IPR013083 -
Psa6g2794 478 Gene3D - 160 341 IPR036987 -
Psa6g2794 478 SUPERFAMILY PUA domain-like 153 343 IPR015947 -
Psa6g2794 478 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 8 117 IPR045134 -
Psa6g2794 478 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 152 471 IPR045134 -
Psa6g2794 478 ProSitePatterns Zinc finger RING-type signature. 418 427 IPR017907 -
Psa6g2794 478 ProSiteProfiles YDG domain profile. 176 324 IPR003105 -
Psa6g2794 478 Pfam SAD/SRA domain 179 327 IPR003105 -
Psa6g2794 478 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 152 471 - -
Psa6g2794 478 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 8 117 - -
Psa6g2794 478 SUPERFAMILY RING/U-box 393 432 - -
Psa6g2794 478 Pfam Zinc finger, C3HC4 type (RING finger) 403 433 IPR018957 GO:0046872
Psa6g2794 478 SMART ring_2 403 463 IPR001841 -
Psa6g2794 478 SMART G9a_1 171 328 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2794 Psa-Chr6 225531009 225537203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2794 8 469 C2H2 Transcription Factor Family AT5G39550 42.207 1.62e-130 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2794 K10638 - gmx:100786796 503.827