Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2790 ATGGAAGAAAGTGAAATTGTTAGTTGCAGAACTTATGCAACACCATGGCATGTTCCATGTTTACCTCTCCGTCCCTTGAAAATCTTTGATTGGAACTGGACTGATTACTCTCAACCTGTGGATGTCAACCACGTCGCCGATGCATCTGCTCCTCCTATCACTTGTAGTCTTGTTTCCACCATCTACGCCAACGAGAATGATACTTCACTCACTAGTGAAGAAAGGGCCAAGAAAAGTCATGAAGTCTATGATGGACCTTCTAAACCATCTTTTGAAAACAACAACAAATATAATGACTTGTATGGCATTTTCTATAGTAAGCTTAACTGCACTTTCTGCTTGCACTTGCCTGAGATACCACTCAATATGGCGAGTGATCCACAAATCAATGCACAATTGGAGACCACCATTCAAATGGCTATATCAGAGAGTGTTGCTCATGGAAAGATATTTGTGACGGTTTCAAAAGATCATTTTGGACCCATTGTTGTTGAGAATGATCCAATAAGAAAACGGGGGGTTCTTGTTGGTGATACATGGGAGGGTTTGATGGAATGTATCCAATGGGGTGCTCATTTTCCCCATGATTCCAGGATTGCTAGTCAGAGTGTTTATGGTGCTCAGTTTGTTGCTCTATCTGGTGGTTACATTGATGAGATAGATCATGGTAATTGGTTTCTTTATAGTGGAAGTTGTGGAAATGACCTTAGTGGTAACAAACGTACCAACAAAAATCAGTCCTTTGATAAAAAATCTGAGAGAAAGAATGAAGCTTTAAGACTCGGTTGCGAAAAAGGTTATCTTGTTCGTGTTGTAAGGTCCCACACGAAGAAACGCTTCTGTTATGCATCCAACGCAGGAGTGCGATACGATGGTGTTTATAGAACTGAAAAATGGTGGCGCAAAATTGGAAAGCAAGTACGGTTCTTGTTTGTAATATTTATCCATTTCATTTATGCATATCGTCCCTATCCACTACCTATAGTTGAGGAGTTGAACAATGCAATTGATATTACTGAAAGGAATGGTGATCCATCATGGGGCTTTGATGACGAAAAAGATTGTTGGCTATGGAAGAAGCCTCCACCGTTAAGTAAGAAACTAGTGAATGTGAATCCTATCGATGAAACAAAAATAAAAGTTGATGTGGCAAAAGCAAGAAGAGTGTCCTCAAAAATCAAGGATAAGCTTTTGAAAGAGTTTGGTTGCAATCTCGGCCACAAGGTGTTGGCTTTCCCTCTTACTACACCATATGCTCACAACTTTTGCAAAGTCTTCTTGGAAGGTGTGTTTTCAAGCCAAAGTTATATAAGGGAGAGGGTCTCTCAAAGTGGATTTTCTTTGTGGCCAAAGAAAAACATCATGAAATATCCTACATGTTCGACTGACATCGTGGATTACCTTAAGATTTTAAAGGTTAACACAGACATGATGAACATCATAAAATCCCTCCATAGAGATTTTTGA 1467 0.3954 MEESEIVSCRTYATPWHVPCLPLRPLKIFDWNWTDYSQPVDVNHVADASAPPITCSLVSTIYANENDTSLTSEERAKKSHEVYDGPSKPSFENNNKYNDLYGIFYSKLNCTFCLHLPEIPLNMASDPQINAQLETTIQMAISESVAHGKIFVTVSKDHFGPIVVENDPIRKRGVLVGDTWEGLMECIQWGAHFPHDSRIASQSVYGAQFVALSGGYIDEIDHGNWFLYSGSCGNDLSGNKRTNKNQSFDKKSERKNEALRLGCEKGYLVRVVRSHTKKRFCYASNAGVRYDGVYRTEKWWRKIGKQVRFLFVIFIHFIYAYRPYPLPIVEELNNAIDITERNGDPSWGFDDEKDCWLWKKPPPLSKKLVNVNPIDETKIKVDVAKARRVSSKIKDKLLKEFGCNLGHKVLAFPLTTPYAHNFCKVFLEGVFSSQSYIRERVSQSGFSLWPKKNIMKYPTCSTDIVDYLKILKVNTDMMNIIKSLHRDF* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2790 488 ProSiteProfiles YDG domain profile. 169 320 IPR003105 -
Psa6g2790 488 SUPERFAMILY PUA domain-like 146 307 IPR015947 -
Psa6g2790 488 MobiDBLite consensus disorder prediction 70 85 - -
Psa6g2790 488 Pfam SAD/SRA domain 172 307 IPR003105 -
Psa6g2790 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 121 IPR045134 -
Psa6g2790 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 145 486 IPR045134 -
Psa6g2790 488 SMART G9a_1 164 312 IPR003105 -
Psa6g2790 488 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 4 121 - -
Psa6g2790 488 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 145 486 - -
Psa6g2790 488 MobiDBLite consensus disorder prediction 68 87 - -
Psa6g2790 488 Gene3D - 153 315 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2790 Psa-Chr6 225477017 225481170 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2790 5 486 C2H2 Transcription Factor Family AT5G39550 39.085 4.45e-121 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2790 K10638 - gmx:100786796 462.225