Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2782 ATGGATAGCACTAACTATTCCAACACTTCCCTTTCCTACTCTACTCTCTTCAACATCGAGCCTTTGATGAACTTTCAACTTCCACAACAAGATGATGAATTTGATTACTACGGGAATAGTAGTCAGGATGAAGAAAGCAGAGATAGTCGAGGTGGGGAAATTTCAAATCACACTAATGGTAATGTGCATTCGATGGATGTGAATTTGTTGAAGAAGAGGGTTTGGTCACAAAATAGTGAAGATGAAGACAAAGGAGGTTTTTACGGGACATACATGACAGAGGAGAGATATCGGTCAATGCTGGGCGACCATGTTCAGAAATACAAGAGGATGTCTAAGGACGCATCCTCTAGTCCTGCCCAAAATTGCACTGTTGTCCCACTTGTGAAAAGTAATAATGGATTTAAAACTCAAAAGTTAGGGAATGCAGATTTTGTGCAGAGAAATGGCACTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGTATCACATACAAAATTCCTCCAATTTATGATAAGCTGGCTACATCGTTGAACCTTCCATGTTTCTCGAATATCCATGTGGATGAATTTTACTTGAAGGGTACCTTAGATTTGGGGTCGTTGGCTGCAATGATGGCTGCTGACAAAAGGTTAGGAAATAAAAACCGAGCAGGCATGGGGGAACCCCTATCTCAATACGAATCTCTCCAGGCACGAATAAACGGCATGTCAGCTTCAAATTCACCTAATAAATTCAGTCTGAATGTGTCTGATATTGGTTTCAATTCATCCATTCCGGAAGGGGCTGCTGGAAGCATGAAGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCTTACCCAAGAAGCAAATGGTAAAGAAAGATCCTGCATCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGCTAAACATTGTAAGAAGAGACATACCAAAACATCATAGGAATTTTACTACTCTTCATCGAAAGCAACTCATTGATGCTAAGAGGTGCTCAGAGTACTGTCAAAGAGAGGTTAGAATGAAAATTAGTAGATCACTTAAATGGAATAGGGGTGCTAGCATTCGCACCCGGAAACTAGCTAAAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCTGAAGTGAGAAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGTGAACAGGAGCTCCGAGAAGCTAAGAGACAGCAGCAAAGGCTTAACTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAGTCAGATTTACTATCTCCGGAAGCTTTACCCATGGTAGAGGAAAAAACAAATGGTCAAGATGCACCGTTCGACTCATCAGATGCTGGGCCTAATGAAGAAGAAGATCCAGAAGAAGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTGTCTAAGCAGAAAAAGTTGACTGATGCGTTTGACAATGAATGTTTGAGGCTGCGACAGGTGGGTGAAGCTGATTCACTTACACATGAAGTTGTAGGAGCAAGTAAAATTGATTTGCAAACTCCATCAACCATGCCAGTGGCATCCACAGTTCAAACACCCGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATACAAGCTATGGTTTTCTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCGCCCGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAACGGCTTCCGTATTGGGGAGGGCTTTCAGAGCGAACAGTACTTAGGAAAAGCATTAACCCAAAGGACCTTTATCGTAGGTAA 1995 0.414 MDSTNYSNTSLSYSTLFNIEPLMNFQLPQQDDEFDYYGNSSQDEESRDSRGGEISNHTNGNVHSMDVNLLKKRVWSQNSEDEDKGGFYGTYMTEERYRSMLGDHVQKYKRMSKDASSSPAQNCTVVPLVKSNNGFKTQKLGNADFVQRNGTDRVMYEPSILEIGDGITYKIPPIYDKLATSLNLPCFSNIHVDEFYLKGTLDLGSLAAMMAADKRLGNKNRAGMGEPLSQYESLQARINGMSASNSPNKFSLNVSDIGFNSSIPEGAAGSMKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQMVKKDPASIEKEEMDRIGKIWLNIVRRDIPKHHRNFTTLHRKQLIDAKRCSEYCQREVRMKISRSLKWNRGASIRTRKLAKDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSPEALPMVEEKTNGQDAPFDSSDAGPNEEEDPEEAELKKEALKAAQEAVSKQKKLTDAFDNECLRLRQVGEADSLTHEVVGASKIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2782 664 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 662 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Psa6g2782 664 PANTHER HELICASE SRCAP-RELATED 17 662 - -
Psa6g2782 664 Gene3D - 533 663 IPR038718 -
Psa6g2782 664 MobiDBLite consensus disorder prediction 37 63 - -
Psa6g2782 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 656 IPR027417 -
Psa6g2782 664 ProSiteProfiles DBINO domain profile. 327 452 IPR020838 GO:0003677
Psa6g2782 664 Coils Coil 399 438 - -
Psa6g2782 664 Pfam DNA-binding domain 323 450 IPR020838 GO:0003677
Psa6g2782 664 MobiDBLite consensus disorder prediction 463 491 - -
Psa6g2782 664 Pfam SNF2-related domain 577 644 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2782 Psa-Chr6 224487098 224491160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2782 548 645 RAD5 or RAD16-like Gene Family AT1G05120 35.238 5.55e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g2782 DBINO 1.1e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2782 K11665 - gmx:100780615 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2782 6 224487098 224491160 Psa6g2782 6 224487098 224491160 ECH